Results 61 - 80 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24106 | 3' | -59.5 | NC_005262.1 | + | 56598 | 0.72 | 0.250521 |
Target: 5'- gUGCGcAUC-CGCGCGUG-GGCGAcgaaGGGCa -3' miRNA: 3'- -AUGC-UGGaGCGCGCGCuCCGCU----UCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 988 | 0.69 | 0.342509 |
Target: 5'- gGCGACCUgCGgG-GCGGGGCGGuguAGaGCu -3' miRNA: 3'- aUGCUGGA-GCgCgCGCUCCGCU---UC-CG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 4564 | 0.69 | 0.342509 |
Target: 5'- gGCGcAUCUCGCGCcaGCGGcGGCGcugcucGGGCg -3' miRNA: 3'- aUGC-UGGAGCGCG--CGCU-CCGCu-----UCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 43829 | 0.69 | 0.350514 |
Target: 5'- cACGGCCgcgggccggcCGCGCGCGgcGGuGCGccGGCa -3' miRNA: 3'- aUGCUGGa---------GCGCGCGC--UC-CGCuuCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 54557 | 0.69 | 0.350514 |
Target: 5'- aGCGACgUCGC-CGCGuucGCGAgcgAGGCg -3' miRNA: 3'- aUGCUGgAGCGcGCGCuc-CGCU---UCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 51196 | 0.69 | 0.357014 |
Target: 5'- gGCGGCC-CGCuggagccGCGCG-GGCGAugcugaucgcaccGGGCu -3' miRNA: 3'- aUGCUGGaGCG-------CGCGCuCCGCU-------------UCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 19307 | 0.69 | 0.358652 |
Target: 5'- gACGugCUCgGCGaUGCGA-GUGAAGGUg -3' miRNA: 3'- aUGCugGAG-CGC-GCGCUcCGCUUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 51074 | 0.69 | 0.358652 |
Target: 5'- cAgGugCUCGC-CGCGcAGGagGAAGGCa -3' miRNA: 3'- aUgCugGAGCGcGCGC-UCCg-CUUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 12990 | 0.68 | 0.392506 |
Target: 5'- cGCGACC-CGCGCGUGAcgugGGUGuacGCg -3' miRNA: 3'- aUGCUGGaGCGCGCGCU----CCGCuucCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 47396 | 0.69 | 0.342509 |
Target: 5'- gGCGACCUCGaGCGCGAcGCGcAGaaaaGCa -3' miRNA: 3'- aUGCUGGAGCgCGCGCUcCGCuUC----CG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 51832 | 0.7 | 0.334635 |
Target: 5'- cGCGGCCgaCGUGCGCGAaGuGCuGAAGcGCg -3' miRNA: 3'- aUGCUGGa-GCGCGCGCU-C-CG-CUUC-CG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 33872 | 0.71 | 0.25681 |
Target: 5'- aACGACgC-CGCGCGCGAGacgaucguGCGucGGCc -3' miRNA: 3'- aUGCUG-GaGCGCGCGCUC--------CGCuuCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 36465 | 0.71 | 0.27645 |
Target: 5'- gGCG-CaugggCGCGCGCGAGGCu--GGCg -3' miRNA: 3'- aUGCuGga---GCGCGCGCUCCGcuuCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 50408 | 0.71 | 0.283258 |
Target: 5'- gGCGAUCagCGcCGCG-GAGcGCGAGGGCc -3' miRNA: 3'- aUGCUGGa-GC-GCGCgCUC-CGCUUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 60836 | 0.71 | 0.283258 |
Target: 5'- -cCGGCCUaCGCGaucgGCGuGGCGAuGGCc -3' miRNA: 3'- auGCUGGA-GCGCg---CGCuCCGCUuCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 22806 | 0.7 | 0.304477 |
Target: 5'- uUACGACCggcaUGUGgcucCGCGAcuacuucgcGGCGAAGGCg -3' miRNA: 3'- -AUGCUGGa---GCGC----GCGCU---------CCGCUUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 49222 | 0.7 | 0.314789 |
Target: 5'- gGCGGCCUcggcggcgcgcagucCGCGCGCGAGGUcc--GCg -3' miRNA: 3'- aUGCUGGA---------------GCGCGCGCUCCGcuucCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 41185 | 0.7 | 0.319289 |
Target: 5'- cGCGAUCgCGUGCGCGcccGGCGAccGCu -3' miRNA: 3'- aUGCUGGaGCGCGCGCu--CCGCUucCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 61606 | 0.7 | 0.326895 |
Target: 5'- -uCGACCgagcagaagCGCGCGCGccugaAGGagcuCGAGGGCg -3' miRNA: 3'- auGCUGGa--------GCGCGCGC-----UCC----GCUUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 52326 | 0.87 | 0.021981 |
Target: 5'- cAUGugCUCGCGCGCGAGcGCGGuAGGCa -3' miRNA: 3'- aUGCugGAGCGCGCGCUC-CGCU-UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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