miRNA display CGI


Results 81 - 100 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 33077 0.66 0.525695
Target:  5'- aGCuucuCCUCGUGCGCuucGGGGUccguuuccuGGAGGCg -3'
miRNA:   3'- aUGcu--GGAGCGCGCG---CUCCG---------CUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 30182 0.66 0.515545
Target:  5'- gGCGGCUUuuccUGCGaCGuCGGGGCGAcuGCg -3'
miRNA:   3'- aUGCUGGA----GCGC-GC-GCUCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 19924 0.66 0.505475
Target:  5'- -uCGGCCaUGCGCGCGAucGCGccGAGGUc -3'
miRNA:   3'- auGCUGGaGCGCGCGCUc-CGC--UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 52387 0.66 0.505475
Target:  5'- gGCGGCCcggCGCgGCGCGGcuucGGCGuGGaGCc -3'
miRNA:   3'- aUGCUGGa--GCG-CGCGCU----CCGCuUC-CG- -5'
24106 3' -59.5 NC_005262.1 + 4154 0.67 0.495491
Target:  5'- gGCGACCa---GCGCGAGGagaGAcuGGCg -3'
miRNA:   3'- aUGCUGGagcgCGCGCUCCg--CUu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 37739 0.67 0.482647
Target:  5'- gACGGCuugaugcgccccugCUUGCGCGcCGcGGCGAgcugcuGGGCg -3'
miRNA:   3'- aUGCUG--------------GAGCGCGC-GCuCCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 28023 0.67 0.479705
Target:  5'- -uCGAacgCUCGCGCGCG-GGUGAAcgaaaaugccgccuuGGCc -3'
miRNA:   3'- auGCUg--GAGCGCGCGCuCCGCUU---------------CCG- -5'
24106 3' -59.5 NC_005262.1 + 21113 0.67 0.475798
Target:  5'- cUGgGGCCaCGCGUGCG-GGCGccacGGCu -3'
miRNA:   3'- -AUgCUGGaGCGCGCGCuCCGCuu--CCG- -5'
24106 3' -59.5 NC_005262.1 + 46254 0.67 0.475798
Target:  5'- cUGCcGCCUCGCGCGCGAccGCGu--GCc -3'
miRNA:   3'- -AUGcUGGAGCGCGCGCUc-CGCuucCG- -5'
24106 3' -59.5 NC_005262.1 + 60964 0.66 0.525695
Target:  5'- cACG-CCagCGCGCaaaCGAGGUcGAGGCg -3'
miRNA:   3'- aUGCuGGa-GCGCGc--GCUCCGcUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 4646 0.66 0.525695
Target:  5'- cGCGuCCUCcaUGCGCGcGGCGAcgcGGCc -3'
miRNA:   3'- aUGCuGGAGc-GCGCGCuCCGCUu--CCG- -5'
24106 3' -59.5 NC_005262.1 + 48125 0.66 0.556569
Target:  5'- gACGAaguUCUCGaaCGUGCGAucgcggaaGGCGAGGGg -3'
miRNA:   3'- aUGCU---GGAGC--GCGCGCU--------CCGCUUCCg -5'
24106 3' -59.5 NC_005262.1 + 45863 0.66 0.556569
Target:  5'- cGCGACCU-GCuCGCcguuGGCGucGGCg -3'
miRNA:   3'- aUGCUGGAgCGcGCGcu--CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 45627 0.66 0.556569
Target:  5'- uUGgGGCgCUCGCGCGaucAGGCG--GGCa -3'
miRNA:   3'- -AUgCUG-GAGCGCGCgc-UCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 17788 0.66 0.556569
Target:  5'- cGCGacGCCUUGCGCGUGcAGgaacGCGAAcacgcGGCu -3'
miRNA:   3'- aUGC--UGGAGCGCGCGC-UC----CGCUU-----CCG- -5'
24106 3' -59.5 NC_005262.1 + 38338 0.66 0.545181
Target:  5'- aGCGgcaucGCCUCGCGCaGCGccucGGGCaGGuugucguAGGCg -3'
miRNA:   3'- aUGC-----UGGAGCGCG-CGC----UCCG-CU-------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 34682 0.66 0.545181
Target:  5'- -uCGGCCuUCGUGCGCGugaugucguucucGGGC--AGGCc -3'
miRNA:   3'- auGCUGG-AGCGCGCGC-------------UCCGcuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 57549 0.66 0.53592
Target:  5'- gGCGGCaaagacCGUGCGCGcGGCGGGcuucagcaucucGGCg -3'
miRNA:   3'- aUGCUGga----GCGCGCGCuCCGCUU------------CCG- -5'
24106 3' -59.5 NC_005262.1 + 27932 0.66 0.53592
Target:  5'- gUGCGcGCgUCGCGCGCacaaacaucuGGGCGGucgcGGCg -3'
miRNA:   3'- -AUGC-UGgAGCGCGCGc---------UCCGCUu---CCG- -5'
24106 3' -59.5 NC_005262.1 + 29708 0.66 0.534894
Target:  5'- -uUGACCacguuuuUCGCGCGCGcGGCGugccaguccGGGUu -3'
miRNA:   3'- auGCUGG-------AGCGCGCGCuCCGCu--------UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.