Results 101 - 120 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24106 | 3' | -59.5 | NC_005262.1 | + | 21113 | 0.67 | 0.475798 |
Target: 5'- cUGgGGCCaCGCGUGCG-GGCGccacGGCu -3' miRNA: 3'- -AUgCUGGaGCGCGCGCuCCGCuu--CCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 27932 | 0.66 | 0.53592 |
Target: 5'- gUGCGcGCgUCGCGCGCacaaacaucuGGGCGGucgcGGCg -3' miRNA: 3'- -AUGC-UGgAGCGCGCGc---------UCCGCUu---CCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 57549 | 0.66 | 0.53592 |
Target: 5'- gGCGGCaaagacCGUGCGCGcGGCGGGcuucagcaucucGGCg -3' miRNA: 3'- aUGCUGga----GCGCGCGCuCCGCUU------------CCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 34682 | 0.66 | 0.545181 |
Target: 5'- -uCGGCCuUCGUGCGCGugaugucguucucGGGC--AGGCc -3' miRNA: 3'- auGCUGG-AGCGCGCGC-------------UCCGcuUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 38338 | 0.66 | 0.545181 |
Target: 5'- aGCGgcaucGCCUCGCGCaGCGccucGGGCaGGuugucguAGGCg -3' miRNA: 3'- aUGC-----UGGAGCGCG-CGC----UCCG-CU-------UCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 17788 | 0.66 | 0.556569 |
Target: 5'- cGCGacGCCUUGCGCGUGcAGgaacGCGAAcacgcGGCu -3' miRNA: 3'- aUGC--UGGAGCGCGCGC-UC----CGCUU-----CCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 45627 | 0.66 | 0.556569 |
Target: 5'- uUGgGGCgCUCGCGCGaucAGGCG--GGCa -3' miRNA: 3'- -AUgCUG-GAGCGCGCgc-UCCGCuuCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 45863 | 0.66 | 0.556569 |
Target: 5'- cGCGACCU-GCuCGCcguuGGCGucGGCg -3' miRNA: 3'- aUGCUGGAgCGcGCGcu--CCGCuuCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 48125 | 0.66 | 0.556569 |
Target: 5'- gACGAaguUCUCGaaCGUGCGAucgcggaaGGCGAGGGg -3' miRNA: 3'- aUGCU---GGAGC--GCGCGCU--------CCGCUUCCg -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 29708 | 0.66 | 0.534894 |
Target: 5'- -uUGACCacguuuuUCGCGCGCGcGGCGugccaguccGGGUu -3' miRNA: 3'- auGCUGG-------AGCGCGCGCuCCGCu--------UCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 4646 | 0.66 | 0.525695 |
Target: 5'- cGCGuCCUCcaUGCGCGcGGCGAcgcGGCc -3' miRNA: 3'- aUGCuGGAGc-GCGCGCuCCGCUu--CCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 60964 | 0.66 | 0.525695 |
Target: 5'- cACG-CCagCGCGCaaaCGAGGUcGAGGCg -3' miRNA: 3'- aUGCuGGa-GCGCGc--GCUCCGcUUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 28023 | 0.67 | 0.479705 |
Target: 5'- -uCGAacgCUCGCGCGCG-GGUGAAcgaaaaugccgccuuGGCc -3' miRNA: 3'- auGCUg--GAGCGCGCGCuCCGCUU---------------CCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 37739 | 0.67 | 0.482647 |
Target: 5'- gACGGCuugaugcgccccugCUUGCGCGcCGcGGCGAgcugcuGGGCg -3' miRNA: 3'- aUGCUG--------------GAGCGCGC-GCuCCGCU------UCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 4154 | 0.67 | 0.495491 |
Target: 5'- gGCGACCa---GCGCGAGGagaGAcuGGCg -3' miRNA: 3'- aUGCUGGagcgCGCGCUCCg--CUu-CCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 52387 | 0.66 | 0.505475 |
Target: 5'- gGCGGCCcggCGCgGCGCGGcuucGGCGuGGaGCc -3' miRNA: 3'- aUGCUGGa--GCG-CGCGCU----CCGCuUC-CG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 19924 | 0.66 | 0.505475 |
Target: 5'- -uCGGCCaUGCGCGCGAucGCGccGAGGUc -3' miRNA: 3'- auGCUGGaGCGCGCGCUc-CGC--UUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 30182 | 0.66 | 0.515545 |
Target: 5'- gGCGGCUUuuccUGCGaCGuCGGGGCGAcuGCg -3' miRNA: 3'- aUGCUGGA----GCGC-GC-GCUCCGCUucCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 33077 | 0.66 | 0.525695 |
Target: 5'- aGCuucuCCUCGUGCGCuucGGGGUccguuuccuGGAGGCg -3' miRNA: 3'- aUGcu--GGAGCGCGCG---CUCCG---------CUUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 48993 | 0.66 | 0.525695 |
Target: 5'- gAUGAUCUCGgaaaCGCGCGAGaUGGacAGGCc -3' miRNA: 3'- aUGCUGGAGC----GCGCGCUCcGCU--UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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