miRNA display CGI


Results 121 - 140 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 17788 0.66 0.556569
Target:  5'- cGCGacGCCUUGCGCGUGcAGgaacGCGAAcacgcGGCu -3'
miRNA:   3'- aUGC--UGGAGCGCGCGC-UC----CGCUU-----CCG- -5'
24106 3' -59.5 NC_005262.1 + 45627 0.66 0.556569
Target:  5'- uUGgGGCgCUCGCGCGaucAGGCG--GGCa -3'
miRNA:   3'- -AUgCUG-GAGCGCGCgc-UCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 45863 0.66 0.556569
Target:  5'- cGCGACCU-GCuCGCcguuGGCGucGGCg -3'
miRNA:   3'- aUGCUGGAgCGcGCGcu--CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 48125 0.66 0.556569
Target:  5'- gACGAaguUCUCGaaCGUGCGAucgcggaaGGCGAGGGg -3'
miRNA:   3'- aUGCU---GGAGC--GCGCGCU--------CCGCUUCCg -5'
24106 3' -59.5 NC_005262.1 + 30182 0.66 0.515545
Target:  5'- gGCGGCUUuuccUGCGaCGuCGGGGCGAcuGCg -3'
miRNA:   3'- aUGCUGGA----GCGC-GC-GCUCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 19924 0.66 0.505475
Target:  5'- -uCGGCCaUGCGCGCGAucGCGccGAGGUc -3'
miRNA:   3'- auGCUGGaGCGCGCGCUc-CGC--UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 52387 0.66 0.505475
Target:  5'- gGCGGCCcggCGCgGCGCGGcuucGGCGuGGaGCc -3'
miRNA:   3'- aUGCUGGa--GCG-CGCGCU----CCGCuUC-CG- -5'
24106 3' -59.5 NC_005262.1 + 11626 0.68 0.437634
Target:  5'- cAUGcCCUCG-GCGuCGAGGCcGGGGUa -3'
miRNA:   3'- aUGCuGGAGCgCGC-GCUCCGcUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 4199 0.68 0.441372
Target:  5'- cACGACCacggccugaucguagUCGCGCGCGAuGUucuGGAGGa -3'
miRNA:   3'- aUGCUGG---------------AGCGCGCGCUcCG---CUUCCg -5'
24106 3' -59.5 NC_005262.1 + 51255 0.67 0.456502
Target:  5'- cGCGACCUgcCGC-CGCaacaugGAGGCGAucGCg -3'
miRNA:   3'- aUGCUGGA--GCGcGCG------CUCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 12420 0.67 0.466098
Target:  5'- cGCGGCCUUG-GCcgGCGucGCGGAcGGCg -3'
miRNA:   3'- aUGCUGGAGCgCG--CGCucCGCUU-CCG- -5'
24106 3' -59.5 NC_005262.1 + 46920 0.67 0.466098
Target:  5'- gUGCGGCC-CG-GCGCGcGGCc-GGGCg -3'
miRNA:   3'- -AUGCUGGaGCgCGCGCuCCGcuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 53003 0.67 0.466098
Target:  5'- cGCGGCagCUCGCgcagcaguaccGCGCGcccGGCGcGGGCg -3'
miRNA:   3'- aUGCUG--GAGCG-----------CGCGCu--CCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 8786 0.67 0.468997
Target:  5'- -cCGACCgCGUGCGCGAGGUacaugucgccuuccuGAAugccgcgccagauGGCg -3'
miRNA:   3'- auGCUGGaGCGCGCGCUCCG---------------CUU-------------CCG- -5'
24106 3' -59.5 NC_005262.1 + 3294 0.67 0.475798
Target:  5'- gGCGGCCUgCGC-CGCGcGGCcc-GGCg -3'
miRNA:   3'- aUGCUGGA-GCGcGCGCuCCGcuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 46254 0.67 0.475798
Target:  5'- cUGCcGCCUCGCGCGCGAccGCGu--GCc -3'
miRNA:   3'- -AUGcUGGAGCGCGCGCUc-CGCuucCG- -5'
24106 3' -59.5 NC_005262.1 + 21113 0.67 0.475798
Target:  5'- cUGgGGCCaCGCGUGCG-GGCGccacGGCu -3'
miRNA:   3'- -AUgCUGGaGCGCGCGCuCCGCuu--CCG- -5'
24106 3' -59.5 NC_005262.1 + 28023 0.67 0.479705
Target:  5'- -uCGAacgCUCGCGCGCG-GGUGAAcgaaaaugccgccuuGGCc -3'
miRNA:   3'- auGCUg--GAGCGCGCGCuCCGCUU---------------CCG- -5'
24106 3' -59.5 NC_005262.1 + 37739 0.67 0.482647
Target:  5'- gACGGCuugaugcgccccugCUUGCGCGcCGcGGCGAgcugcuGGGCg -3'
miRNA:   3'- aUGCUG--------------GAGCGCGC-GCuCCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 4154 0.67 0.495491
Target:  5'- gGCGACCa---GCGCGAGGagaGAcuGGCg -3'
miRNA:   3'- aUGCUGGagcgCGCGCUCCg--CUu-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.