miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 32022 0.68 0.419222
Target:  5'- gACGA--UCGCGCGCGAuGCGgcGGa -3'
miRNA:   3'- aUGCUggAGCGCGCGCUcCGCuuCCg -5'
24106 3' -59.5 NC_005262.1 + 4154 0.67 0.495491
Target:  5'- gGCGACCa---GCGCGAGGagaGAcuGGCg -3'
miRNA:   3'- aUGCUGGagcgCGCGCUCCg--CUu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 45863 0.66 0.556569
Target:  5'- cGCGACCU-GCuCGCcguuGGCGucGGCg -3'
miRNA:   3'- aUGCUGGAgCGcGCGcu--CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 46627 0.68 0.419222
Target:  5'- cGCGuCCUCGCGCGCGGccuUGccGGCc -3'
miRNA:   3'- aUGCuGGAGCGCGCGCUcc-GCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 48125 0.66 0.556569
Target:  5'- gACGAaguUCUCGaaCGUGCGAucgcggaaGGCGAGGGg -3'
miRNA:   3'- aUGCU---GGAGC--GCGCGCU--------CCGCUUCCg -5'
24106 3' -59.5 NC_005262.1 + 4809 0.74 0.184634
Target:  5'- cGCGACg--GCGCGgGAGGCGuGAGGCc -3'
miRNA:   3'- aUGCUGgagCGCGCgCUCCGC-UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 17788 0.66 0.556569
Target:  5'- cGCGacGCCUUGCGCGUGcAGgaacGCGAAcacgcGGCu -3'
miRNA:   3'- aUGC--UGGAGCGCGCGC-UC----CGCUU-----CCG- -5'
24106 3' -59.5 NC_005262.1 + 33019 0.73 0.215428
Target:  5'- gGCu-CCUUaGcCGCGCGAGGCGAgguAGGCa -3'
miRNA:   3'- aUGcuGGAG-C-GCGCGCUCCGCU---UCCG- -5'
24106 3' -59.5 NC_005262.1 + 35229 0.72 0.250521
Target:  5'- cAUG-CCgUCGCGCGCGcGGCGGaagccccagauAGGCg -3'
miRNA:   3'- aUGCuGG-AGCGCGCGCuCCGCU-----------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 61065 0.7 0.326895
Target:  5'- cGgGACCUCGagGCGCaGGGCGAGcGCu -3'
miRNA:   3'- aUgCUGGAGCg-CGCGcUCCGCUUcCG- -5'
24106 3' -59.5 NC_005262.1 + 19079 0.7 0.336983
Target:  5'- cGCGGCCgagcugcauuuccUCGCGCGC--GGCGAugccacguucggaucGGGCg -3'
miRNA:   3'- aUGCUGG-------------AGCGCGCGcuCCGCU---------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 40474 0.69 0.375321
Target:  5'- cGCGugCUCGUGCGCGGcGCcuugaugcgcuuGAuGGCg -3'
miRNA:   3'- aUGCugGAGCGCGCGCUcCG------------CUuCCG- -5'
24106 3' -59.5 NC_005262.1 + 52790 0.68 0.392506
Target:  5'- aGCcGCCUCGCucgucagccGUGCGAGcGCGAccGGCg -3'
miRNA:   3'- aUGcUGGAGCG---------CGCGCUC-CGCUu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 11626 0.68 0.437634
Target:  5'- cAUGcCCUCG-GCGuCGAGGCcGGGGUa -3'
miRNA:   3'- aUGCuGGAGCgCGC-GCUCCGcUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 12420 0.67 0.466098
Target:  5'- cGCGGCCUUG-GCcgGCGucGCGGAcGGCg -3'
miRNA:   3'- aUGCUGGAGCgCG--CGCucCGCUU-CCG- -5'
24106 3' -59.5 NC_005262.1 + 3294 0.67 0.475798
Target:  5'- gGCGGCCUgCGC-CGCGcGGCcc-GGCg -3'
miRNA:   3'- aUGCUGGA-GCGcGCGCuCCGcuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 28023 0.67 0.479705
Target:  5'- -uCGAacgCUCGCGCGCG-GGUGAAcgaaaaugccgccuuGGCc -3'
miRNA:   3'- auGCUg--GAGCGCGCGCuCCGCUU---------------CCG- -5'
24106 3' -59.5 NC_005262.1 + 30182 0.66 0.515545
Target:  5'- gGCGGCUUuuccUGCGaCGuCGGGGCGAcuGCg -3'
miRNA:   3'- aUGCUGGA----GCGC-GC-GCUCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 60964 0.66 0.525695
Target:  5'- cACG-CCagCGCGCaaaCGAGGUcGAGGCg -3'
miRNA:   3'- aUGCuGGa-GCGCGc--GCUCCGcUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 57549 0.66 0.53592
Target:  5'- gGCGGCaaagacCGUGCGCGcGGCGGGcuucagcaucucGGCg -3'
miRNA:   3'- aUGCUGga----GCGCGCGCuCCGCUU------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.