miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 4154 0.67 0.495491
Target:  5'- gGCGACCa---GCGCGAGGagaGAcuGGCg -3'
miRNA:   3'- aUGCUGGagcgCGCGCUCCg--CUu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 30182 0.66 0.515545
Target:  5'- gGCGGCUUuuccUGCGaCGuCGGGGCGAcuGCg -3'
miRNA:   3'- aUGCUGGA----GCGC-GC-GCUCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 4646 0.66 0.525695
Target:  5'- cGCGuCCUCcaUGCGCGcGGCGAcgcGGCc -3'
miRNA:   3'- aUGCuGGAGc-GCGCGCuCCGCUu--CCG- -5'
24106 3' -59.5 NC_005262.1 + 39633 0.76 0.130969
Target:  5'- gACGcCCUCGCGCGC---GUGAAGGCa -3'
miRNA:   3'- aUGCuGGAGCGCGCGcucCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 35636 0.67 0.495491
Target:  5'- aACGGCa-CGCG-GCG-GGCGAuGGGCu -3'
miRNA:   3'- aUGCUGgaGCGCgCGCuCCGCU-UCCG- -5'
24106 3' -59.5 NC_005262.1 + 61606 0.7 0.326895
Target:  5'- -uCGACCgagcagaagCGCGCGCGccugaAGGagcuCGAGGGCg -3'
miRNA:   3'- auGCUGGa--------GCGCGCGC-----UCC----GCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 41185 0.7 0.319289
Target:  5'- cGCGAUCgCGUGCGCGcccGGCGAccGCu -3'
miRNA:   3'- aUGCUGGaGCGCGCGCu--CCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 49222 0.7 0.314789
Target:  5'- gGCGGCCUcggcggcgcgcagucCGCGCGCGAGGUcc--GCg -3'
miRNA:   3'- aUGCUGGA---------------GCGCGCGCUCCGcuucCG- -5'
24106 3' -59.5 NC_005262.1 + 47396 0.69 0.342509
Target:  5'- gGCGACCUCGaGCGCGAcGCGcAGaaaaGCa -3'
miRNA:   3'- aUGCUGGAGCgCGCGCUcCGCuUC----CG- -5'
24106 3' -59.5 NC_005262.1 + 51832 0.7 0.334635
Target:  5'- cGCGGCCgaCGUGCGCGAaGuGCuGAAGcGCg -3'
miRNA:   3'- aUGCUGGa-GCGCGCGCU-C-CG-CUUC-CG- -5'
24106 3' -59.5 NC_005262.1 + 33520 0.67 0.456502
Target:  5'- aACGGCCUgGa-CGaCGAGGCGAucGCg -3'
miRNA:   3'- aUGCUGGAgCgcGC-GCUCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 11469 0.67 0.466098
Target:  5'- cUACcGCgCUCGCGCGCGAGcacauGGGCc -3'
miRNA:   3'- -AUGcUG-GAGCGCGCGCUCcgcu-UCCG- -5'
24106 3' -59.5 NC_005262.1 + 10823 0.67 0.469966
Target:  5'- cACGACCagCGCauGCGCGuccgccgcgcucaggGGGCGGcaugagugaGGGCg -3'
miRNA:   3'- aUGCUGGa-GCG--CGCGC---------------UCCGCU---------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 61551 0.67 0.475798
Target:  5'- gGCGAUCUCG-GCGauccgggaCGAGGCGGugacGGUg -3'
miRNA:   3'- aUGCUGGAGCgCGC--------GCUCCGCUu---CCG- -5'
24106 3' -59.5 NC_005262.1 + 44937 0.67 0.499474
Target:  5'- cUACGACagccccgaGCGUcaggagcagauggccGcCGAGGCGAGGGCc -3'
miRNA:   3'- -AUGCUGgag-----CGCG---------------C-GCUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 46990 0.66 0.505475
Target:  5'- gGCGAaggcaUgGCGCGCGAcgcagaugGGCGAcaucgaGGGCg -3'
miRNA:   3'- aUGCUgg---AgCGCGCGCU--------CCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 50225 0.66 0.505475
Target:  5'- cACGACCgaaCGC-CGCaAGGUGucGGCc -3'
miRNA:   3'- aUGCUGGa--GCGcGCGcUCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 22150 0.67 0.455548
Target:  5'- cGCGGCUgcccgcaUCGC-CGagcugGAGGCGAAGGUc -3'
miRNA:   3'- aUGCUGG-------AGCGcGCg----CUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 17053 0.73 0.194441
Target:  5'- cGCGAgCUCGuCGCGCGcacGGCGccgauAGGCg -3'
miRNA:   3'- aUGCUgGAGC-GCGCGCu--CCGCu----UCCG- -5'
24106 3' -59.5 NC_005262.1 + 59111 0.73 0.194441
Target:  5'- cUACGACUacuacCGCGC-CGAGGCGAAccGGCc -3'
miRNA:   3'- -AUGCUGGa----GCGCGcGCUCCGCUU--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.