miRNA display CGI


Results 81 - 100 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 17544 0.76 0.127499
Target:  5'- cGCGG--UCGCGCGCGAGGCGGcagccgcGGCg -3'
miRNA:   3'- aUGCUggAGCGCGCGCUCCGCUu------CCG- -5'
24106 3' -59.5 NC_005262.1 + 36104 0.68 0.410194
Target:  5'- -uUGACCUgaucuucgaCGCuGCGCGAuacGGCG-AGGCg -3'
miRNA:   3'- auGCUGGA---------GCG-CGCGCU---CCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 43866 0.68 0.410194
Target:  5'- cAgGACCUCG-GCGCGAucgcgcgcauGGCcgacaugaagucGAAGGCg -3'
miRNA:   3'- aUgCUGGAGCgCGCGCU----------CCG------------CUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 54760 0.68 0.419222
Target:  5'- aACGcACgUCGaCGC-CGAGGCGAccgagaAGGCc -3'
miRNA:   3'- aUGC-UGgAGC-GCGcGCUCCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 46990 0.66 0.505475
Target:  5'- gGCGAaggcaUgGCGCGCGAcgcagaugGGCGAcaucgaGGGCg -3'
miRNA:   3'- aUGCUgg---AgCGCGCGCU--------CCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 49830 0.66 0.504473
Target:  5'- cGCGAUggaGCGCGCGAauggcccggugccGGCGgcGGUa -3'
miRNA:   3'- aUGCUGgagCGCGCGCU-------------CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 44937 0.67 0.499474
Target:  5'- cUACGACagccccgaGCGUcaggagcagauggccGcCGAGGCGAGGGCc -3'
miRNA:   3'- -AUGCUGgag-----CGCG---------------C-GCUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 35636 0.67 0.495491
Target:  5'- aACGGCa-CGCG-GCG-GGCGAuGGGCu -3'
miRNA:   3'- aUGCUGgaGCGCgCGCuCCGCU-UCCG- -5'
24106 3' -59.5 NC_005262.1 + 61551 0.67 0.475798
Target:  5'- gGCGAUCUCG-GCGauccgggaCGAGGCGGugacGGUg -3'
miRNA:   3'- aUGCUGGAGCgCGC--------GCUCCGCUu---CCG- -5'
24106 3' -59.5 NC_005262.1 + 10823 0.67 0.469966
Target:  5'- cACGACCagCGCauGCGCGuccgccgcgcucaggGGGCGGcaugagugaGGGCg -3'
miRNA:   3'- aUGCUGGa-GCG--CGCGC---------------UCCGCU---------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 11469 0.67 0.466098
Target:  5'- cUACcGCgCUCGCGCGCGAGcacauGGGCc -3'
miRNA:   3'- -AUGcUG-GAGCGCGCGCUCcgcu-UCCG- -5'
24106 3' -59.5 NC_005262.1 + 33520 0.67 0.456502
Target:  5'- aACGGCCUgGa-CGaCGAGGCGAucGCg -3'
miRNA:   3'- aUGCUGGAgCgcGC-GCUCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 22150 0.67 0.455548
Target:  5'- cGCGGCUgcccgcaUCGC-CGagcugGAGGCGAAGGUc -3'
miRNA:   3'- aUGCUGG-------AGCGcGCg----CUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 8270 0.67 0.454595
Target:  5'- aGCGGCCgaggaagcugccCGCGUcgcucGCGAGGCGGccaagaAGGUg -3'
miRNA:   3'- aUGCUGGa-----------GCGCG-----CGCUCCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 16407 0.68 0.437634
Target:  5'- -cCGGCCgccgggauucUGCGcCGCGAGGCGcAAGGa -3'
miRNA:   3'- auGCUGGa---------GCGC-GCGCUCCGC-UUCCg -5'
24106 3' -59.5 NC_005262.1 + 45777 0.68 0.437634
Target:  5'- -uCGGCaUCGCG-GCGAagGGCGgcGGCg -3'
miRNA:   3'- auGCUGgAGCGCgCGCU--CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 5076 0.68 0.437634
Target:  5'- gGCGGCggCGCGUGCGAccGGCuc-GGCg -3'
miRNA:   3'- aUGCUGgaGCGCGCGCU--CCGcuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 63063 0.68 0.42837
Target:  5'- -cCGGCacgucaUCGCGgGCGAGuauGCGgcGGCg -3'
miRNA:   3'- auGCUGg-----AGCGCgCGCUC---CGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 34844 0.68 0.42745
Target:  5'- gACuuCCUCGCGCGCGAGcacaUGAcccucaucucgugGGGCg -3'
miRNA:   3'- aUGcuGGAGCGCGCGCUCc---GCU-------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 17165 0.68 0.425613
Target:  5'- --aGGCCggcaaggcCGCGCGCGAGGaCGcgaccgcguucagcAAGGCc -3'
miRNA:   3'- augCUGGa-------GCGCGCGCUCC-GC--------------UUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.