miRNA display CGI


Results 101 - 120 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 22150 0.67 0.455548
Target:  5'- cGCGGCUgcccgcaUCGC-CGagcugGAGGCGAAGGUc -3'
miRNA:   3'- aUGCUGG-------AGCGcGCg----CUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 8270 0.67 0.454595
Target:  5'- aGCGGCCgaggaagcugccCGCGUcgcucGCGAGGCGGccaagaAGGUg -3'
miRNA:   3'- aUGCUGGa-----------GCGCG-----CGCUCCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 16407 0.68 0.437634
Target:  5'- -cCGGCCgccgggauucUGCGcCGCGAGGCGcAAGGa -3'
miRNA:   3'- auGCUGGa---------GCGC-GCGCUCCGC-UUCCg -5'
24106 3' -59.5 NC_005262.1 + 54760 0.68 0.419222
Target:  5'- aACGcACgUCGaCGC-CGAGGCGAccgagaAGGCc -3'
miRNA:   3'- aUGC-UGgAGC-GCGcGCUCCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 43866 0.68 0.410194
Target:  5'- cAgGACCUCG-GCGCGAucgcgcgcauGGCcgacaugaagucGAAGGCg -3'
miRNA:   3'- aUgCUGGAGCgCGCGCU----------CCG------------CUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 36104 0.68 0.410194
Target:  5'- -uUGACCUgaucuucgaCGCuGCGCGAuacGGCG-AGGCg -3'
miRNA:   3'- auGCUGGA---------GCG-CGCGCU---CCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 19307 0.69 0.358652
Target:  5'- gACGugCUCgGCGaUGCGA-GUGAAGGUg -3'
miRNA:   3'- aUGCugGAG-CGC-GCGCUcCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 51074 0.69 0.358652
Target:  5'- cAgGugCUCGC-CGCGcAGGagGAAGGCa -3'
miRNA:   3'- aUgCugGAGCGcGCGC-UCCg-CUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 12990 0.68 0.392506
Target:  5'- cGCGACC-CGCGCGUGAcgugGGUGuacGCg -3'
miRNA:   3'- aUGCUGGaGCGCGCGCU----CCGCuucCG- -5'
24106 3' -59.5 NC_005262.1 + 24731 0.68 0.392506
Target:  5'- cGCG-CUggCGCGCGCGAucGGCGugcGGCc -3'
miRNA:   3'- aUGCuGGa-GCGCGCGCU--CCGCuu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 38691 0.68 0.392506
Target:  5'- aACGAuUCUUGCuGUGCugcccGGCGAAGGCa -3'
miRNA:   3'- aUGCU-GGAGCG-CGCGcu---CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 49687 0.66 0.556569
Target:  5'- gGCGGCg-CGCGCaaccugaaccGCGAcGGCGugccGGGCg -3'
miRNA:   3'- aUGCUGgaGCGCG----------CGCU-CCGCu---UCCG- -5'
24106 3' -59.5 NC_005262.1 + 47566 0.66 0.556569
Target:  5'- gGCGACgUCGCcCGaCGAaGCGAAgcGGCu -3'
miRNA:   3'- aUGCUGgAGCGcGC-GCUcCGCUU--CCG- -5'
24106 3' -59.5 NC_005262.1 + 49758 0.66 0.546213
Target:  5'- gGCGGCgCcCGCGCcCGAGGCuccGGCc -3'
miRNA:   3'- aUGCUG-GaGCGCGcGCUCCGcuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 11875 0.66 0.546213
Target:  5'- gGCGACguguaUCGCGCGaaAGGUGGccgcGGCa -3'
miRNA:   3'- aUGCUGg----AGCGCGCgcUCCGCUu---CCG- -5'
24106 3' -59.5 NC_005262.1 + 40731 0.66 0.546213
Target:  5'- gACGcCCUCGaGCaCG-GGCGgcGGCg -3'
miRNA:   3'- aUGCuGGAGCgCGcGCuCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 48445 0.66 0.543118
Target:  5'- cAUGACCaCGCGCGCGuaugccGcGCGGaucgcgagccgcguGGGCa -3'
miRNA:   3'- aUGCUGGaGCGCGCGCu-----C-CGCU--------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 1893 0.66 0.53592
Target:  5'- cAUuGCC-CGUGCcuucgaGCGGGGCGGAGGg -3'
miRNA:   3'- aUGcUGGaGCGCG------CGCUCCGCUUCCg -5'
24106 3' -59.5 NC_005262.1 + 54404 0.68 0.401288
Target:  5'- gGCaACgUCGUGCGCaagcucgcgGAGGCGcAGGCc -3'
miRNA:   3'- aUGcUGgAGCGCGCG---------CUCCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 25441 0.68 0.404836
Target:  5'- cUACGACaaccugcccgaggCGCuGCGCGAGGCGAugccGCu -3'
miRNA:   3'- -AUGCUGga-----------GCG-CGCGCUCCGCUuc--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.