miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 52529 0.66 0.534894
Target:  5'- -uCGGCCgaggagaUCGCGCugGCGcAGGCGAuggaaacgaucgAGGCc -3'
miRNA:   3'- auGCUGG-------AGCGCG--CGC-UCCGCU------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 4646 0.66 0.525695
Target:  5'- cGCGuCCUCcaUGCGCGcGGCGAcgcGGCc -3'
miRNA:   3'- aUGCuGGAGc-GCGCGCuCCGCUu--CCG- -5'
24106 3' -59.5 NC_005262.1 + 48993 0.66 0.525695
Target:  5'- gAUGAUCUCGgaaaCGCGCGAGaUGGacAGGCc -3'
miRNA:   3'- aUGCUGGAGC----GCGCGCUCcGCU--UCCG- -5'
24106 3' -59.5 NC_005262.1 + 60964 0.66 0.525695
Target:  5'- cACG-CCagCGCGCaaaCGAGGUcGAGGCg -3'
miRNA:   3'- aUGCuGGa-GCGCGc--GCUCCGcUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 33077 0.66 0.525695
Target:  5'- aGCuucuCCUCGUGCGCuucGGGGUccguuuccuGGAGGCg -3'
miRNA:   3'- aUGcu--GGAGCGCGCG---CUCCG---------CUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 23562 0.66 0.525695
Target:  5'- aACcGCCcgcCGCGCGCG-GGCGcAGGa -3'
miRNA:   3'- aUGcUGGa--GCGCGCGCuCCGCuUCCg -5'
24106 3' -59.5 NC_005262.1 + 19774 0.66 0.519596
Target:  5'- cAUGGCCaaucUCGUGCGCGuggucgucgcacaucGGGCGGucGCa -3'
miRNA:   3'- aUGCUGG----AGCGCGCGC---------------UCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 60122 0.66 0.515545
Target:  5'- cACGAgggCGCcaGCGuCGcGGCGAAGGCa -3'
miRNA:   3'- aUGCUggaGCG--CGC-GCuCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 32283 0.66 0.515545
Target:  5'- aACGAUUaCG-GCGCGGGcGCGAacgucgAGGCa -3'
miRNA:   3'- aUGCUGGaGCgCGCGCUC-CGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 30182 0.66 0.515545
Target:  5'- gGCGGCUUuuccUGCGaCGuCGGGGCGAcuGCg -3'
miRNA:   3'- aUGCUGGA----GCGC-GC-GCUCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 50225 0.66 0.505475
Target:  5'- cACGACCgaaCGC-CGCaAGGUGucGGCc -3'
miRNA:   3'- aUGCUGGa--GCGcGCGcUCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 52387 0.66 0.505475
Target:  5'- gGCGGCCcggCGCgGCGCGGcuucGGCGuGGaGCc -3'
miRNA:   3'- aUGCUGGa--GCG-CGCGCU----CCGCuUC-CG- -5'
24106 3' -59.5 NC_005262.1 + 19924 0.66 0.505475
Target:  5'- -uCGGCCaUGCGCGCGAucGCGccGAGGUc -3'
miRNA:   3'- auGCUGGaGCGCGCGCUc-CGC--UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 56963 0.66 0.505475
Target:  5'- gGCGAgUUCGCGgGCGuGGUc--GGCa -3'
miRNA:   3'- aUGCUgGAGCGCgCGCuCCGcuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 46990 0.66 0.505475
Target:  5'- gGCGAaggcaUgGCGCGCGAcgcagaugGGCGAcaucgaGGGCg -3'
miRNA:   3'- aUGCUgg---AgCGCGCGCU--------CCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 49830 0.66 0.504473
Target:  5'- cGCGAUggaGCGCGCGAauggcccggugccGGCGgcGGUa -3'
miRNA:   3'- aUGCUGgagCGCGCGCU-------------CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 44937 0.67 0.499474
Target:  5'- cUACGACagccccgaGCGUcaggagcagauggccGcCGAGGCGAGGGCc -3'
miRNA:   3'- -AUGCUGgag-----CGCG---------------C-GCUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 4154 0.67 0.495491
Target:  5'- gGCGACCa---GCGCGAGGagaGAcuGGCg -3'
miRNA:   3'- aUGCUGGagcgCGCGCUCCg--CUu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 35636 0.67 0.495491
Target:  5'- aACGGCa-CGCG-GCG-GGCGAuGGGCu -3'
miRNA:   3'- aUGCUGgaGCGCgCGCuCCGCU-UCCG- -5'
24106 3' -59.5 NC_005262.1 + 37739 0.67 0.482647
Target:  5'- gACGGCuugaugcgccccugCUUGCGCGcCGcGGCGAgcugcuGGGCg -3'
miRNA:   3'- aUGCUG--------------GAGCGCGC-GCuCCGCU------UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.