Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24106 | 5' | -50.7 | NC_005262.1 | + | 61652 | 0.68 | 0.889975 |
Target: 5'- aGGAAgugcuguaCCGCGgCGCGcuGGAGGCGu -3' miRNA: 3'- -CCUUaa------GGUGCaGCGCuuCUUCCGCc -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 61408 | 0.68 | 0.889975 |
Target: 5'- -----cUCGCG-CGCGAGgcGAAGGCGGc -3' miRNA: 3'- ccuuaaGGUGCaGCGCUU--CUUCCGCC- -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 51275 | 0.69 | 0.882553 |
Target: 5'- uGGAGgcgaUCGCGUCGCGcggcaucuGAAGcGCGGu -3' miRNA: 3'- -CCUUaa--GGUGCAGCGCuu------CUUC-CGCC- -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 62117 | 0.69 | 0.882553 |
Target: 5'- -----aCCGCGUCGCGGAuGAacgacgacuuugAGGCGa -3' miRNA: 3'- ccuuaaGGUGCAGCGCUU-CU------------UCCGCc -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 62862 | 0.69 | 0.874872 |
Target: 5'- aGGAUggCACGcCGUGAAGAuGGGCGa -3' miRNA: 3'- cCUUAagGUGCaGCGCUUCU-UCCGCc -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 21224 | 0.69 | 0.874872 |
Target: 5'- aGGAGUUUCuuGUCGaccuGAAcggcacGAAGGCGGc -3' miRNA: 3'- -CCUUAAGGugCAGCg---CUU------CUUCCGCC- -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 16415 | 0.7 | 0.832823 |
Target: 5'- cGGGAUUCUGCGcCGCGAGGcgcAAGGa-- -3' miRNA: 3'- -CCUUAAGGUGCaGCGCUUC---UUCCgcc -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 22823 | 0.7 | 0.814454 |
Target: 5'- ----cUCCGCGacuacuUCGCGgcGAAGGCGc -3' miRNA: 3'- ccuuaAGGUGC------AGCGCuuCUUCCGCc -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 25532 | 0.71 | 0.795315 |
Target: 5'- ----aUCCGCGUCGCGAcGuccgugcgcGGCGGc -3' miRNA: 3'- ccuuaAGGUGCAGCGCUuCuu-------CCGCC- -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 20237 | 0.71 | 0.795315 |
Target: 5'- -----cCCACGUcugCGCGAGGAauccggacggcAGGCGGc -3' miRNA: 3'- ccuuaaGGUGCA---GCGCUUCU-----------UCCGCC- -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 58196 | 0.71 | 0.744662 |
Target: 5'- ---uUUCCGCGUCGCcugcGGAGAGcGGCGc -3' miRNA: 3'- ccuuAAGGUGCAGCG----CUUCUU-CCGCc -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 32312 | 0.72 | 0.73414 |
Target: 5'- cGGAcgUCgACG--GCGAGGucGGCGGa -3' miRNA: 3'- -CCUuaAGgUGCagCGCUUCuuCCGCC- -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 35892 | 0.73 | 0.669251 |
Target: 5'- ----gUUCACGUCGgacagguacuUGAGGAGGGCGGu -3' miRNA: 3'- ccuuaAGGUGCAGC----------GCUUCUUCCGCC- -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 201 | 0.74 | 0.614098 |
Target: 5'- ----gUCCACGcCgGCGggGgcGGCGGa -3' miRNA: 3'- ccuuaAGGUGCaG-CGCuuCuuCCGCC- -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 8278 | 0.74 | 0.614098 |
Target: 5'- aGGAAgcugcCCGCGUCGCucGcGAGGCGGc -3' miRNA: 3'- -CCUUaa---GGUGCAGCGcuUcUUCCGCC- -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 63318 | 0.74 | 0.592078 |
Target: 5'- uGGAAcacgcgcgCCGCGUCGcCGAGGucaacgcccucAAGGCGGa -3' miRNA: 3'- -CCUUaa------GGUGCAGC-GCUUC-----------UUCCGCC- -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 60126 | 0.74 | 0.592078 |
Target: 5'- aGGGcg-CCAgCGUCGCGgcGAAGGCa- -3' miRNA: 3'- -CCUuaaGGU-GCAGCGCuuCUUCCGcc -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 27850 | 0.75 | 0.548512 |
Target: 5'- aGGugcugCCGCGUCGCaAGGAcGGCGGc -3' miRNA: 3'- -CCuuaa-GGUGCAGCGcUUCUuCCGCC- -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 63 | 0.79 | 0.370738 |
Target: 5'- gGGGAggCCGCGgcUCGCGAAGAAGuCGGc -3' miRNA: 3'- -CCUUaaGGUGC--AGCGCUUCUUCcGCC- -5' |
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24106 | 5' | -50.7 | NC_005262.1 | + | 61436 | 1.13 | 0.002418 |
Target: 5'- aGGAAUUCCACGUCGCGAAGAAGGCGGc -3' miRNA: 3'- -CCUUAAGGUGCAGCGCUUCUUCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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