Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 24107 | 3' | -56.7 | NC_005262.1 | + | 9758 | 0.72 | 0.341155 |
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Target: 5'- cGCC-CGuGCGCUCGAugGUGCUguaggCGAGCAGg -3' miRNA: 3'- -CGGaGC-CGCGAGCU--CAUGG-----GCUUGUC- -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 1941 | 0.72 | 0.374257 |
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Target: 5'- cGCCUUGGCGCUgGGGauuuucaUCGGGCAGu -3' miRNA: 3'- -CGGAGCCGCGAgCUCaug----GGCUUGUC- -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 26815 | 0.73 | 0.317752 |
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Target: 5'- uUCUUGGgGCUCGGGUcgauACCCGAuacgaGCAGc -3' miRNA: 3'- cGGAGCCgCGAGCUCA----UGGGCU-----UGUC- -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 11509 | 0.73 | 0.310224 |
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Target: 5'- -gCUCGGCuGCaUCGuGUGCCUGAACAu -3' miRNA: 3'- cgGAGCCG-CG-AGCuCAUGGGCUUGUc -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 34473 | 0.74 | 0.261328 |
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Target: 5'- aGCCUaCGGCGUUCGAGcacAUCCGcGCGGc -3' miRNA: 3'- -CGGA-GCCGCGAGCUCa--UGGGCuUGUC- -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 46258 | 0.74 | 0.267909 |
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Target: 5'- cGCCUCGcGCGCgacCGcGUGCCCGuGCAu -3' miRNA: 3'- -CGGAGC-CGCGa--GCuCAUGGGCuUGUc -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 8380 | 0.79 | 0.136069 |
|
Target: 5'- cGCCUccagcCGGCGCUCGAGcUGCUCGAuGCGGc -3' miRNA: 3'- -CGGA-----GCCGCGAGCUC-AUGGGCU-UGUC- -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 4685 | 0.79 | 0.122063 |
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Target: 5'- cGCCUCGGCGCgguaguagUCGuAGUugCCGAGCu- -3' miRNA: 3'- -CGGAGCCGCG--------AGC-UCAugGGCUUGuc -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 61817 | 1.11 | 0.000709 |
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Target: 5'- uGCCUCGGCGCUCGAGUACCCGAACAGg -3' miRNA: 3'- -CGGAGCCGCGAGCUCAUGGGCUUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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