Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24107 | 3' | -56.7 | NC_005262.1 | + | 56118 | 0.69 | 0.536582 |
Target: 5'- cGUUUCGucgacccgaccGCGC-CGAGcgACCCGAACAGc -3' miRNA: 3'- -CGGAGC-----------CGCGaGCUCa-UGGGCUUGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 43037 | 0.69 | 0.495687 |
Target: 5'- aUCUCguGGCGCUgGGGUucgaCCGGGCAGg -3' miRNA: 3'- cGGAG--CCGCGAgCUCAug--GGCUUGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 2828 | 0.68 | 0.568004 |
Target: 5'- cGCCUCGaccucguuugcGCGCUgGcGUGCCCGcACGa -3' miRNA: 3'- -CGGAGC-----------CGCGAgCuCAUGGGCuUGUc -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 38889 | 0.68 | 0.599869 |
Target: 5'- uGCCUCGGCGUccUCcGGcUGgCCGAGCu- -3' miRNA: 3'- -CGGAGCCGCG--AGcUC-AUgGGCUUGuc -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 9039 | 0.68 | 0.599869 |
Target: 5'- cGCCUCGGCG-UCGAcGUGcguuuucccuuCCUGAucGCGGa -3' miRNA: 3'- -CGGAGCCGCgAGCU-CAU-----------GGGCU--UGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 30502 | 0.68 | 0.599869 |
Target: 5'- gGCUUCGGCGCcCGGcGUGCgCGcgauGCGGu -3' miRNA: 3'- -CGGAGCCGCGaGCU-CAUGgGCu---UGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 39895 | 0.68 | 0.566948 |
Target: 5'- cGCCUCGGCG-UCGAu--CCUGAcacgguaGCAGg -3' miRNA: 3'- -CGGAGCCGCgAGCUcauGGGCU-------UGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 3433 | 0.68 | 0.599869 |
Target: 5'- cGCUUCaGcGCGCUCGGGgaucaGCUCGAACc- -3' miRNA: 3'- -CGGAG-C-CGCGAGCUCa----UGGGCUUGuc -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 48400 | 0.68 | 0.58921 |
Target: 5'- cGCCUCGcugaaGCGCggCGAaauCCCGAACAc -3' miRNA: 3'- -CGGAGC-----CGCGa-GCUcauGGGCUUGUc -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 22709 | 0.67 | 0.610553 |
Target: 5'- gGCCggCGGCGUUgaCGAgcGUGCCgGGACAc -3' miRNA: 3'- -CGGa-GCCGCGA--GCU--CAUGGgCUUGUc -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 36603 | 0.67 | 0.636251 |
Target: 5'- cGCUUCGGCGCaaaggggaaugcgguUCG-GUugCUGGAUGGc -3' miRNA: 3'- -CGGAGCCGCG---------------AGCuCAugGGCUUGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 59206 | 0.67 | 0.621255 |
Target: 5'- uCCUgCgGGCGCUCac--GCCCGAGCAGc -3' miRNA: 3'- cGGA-G-CCGCGAGcucaUGGGCUUGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 25803 | 0.67 | 0.621255 |
Target: 5'- gGCa--GGCGCcCGAGUACCgGAugGa -3' miRNA: 3'- -CGgagCCGCGaGCUCAUGGgCUugUc -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 48563 | 0.67 | 0.610553 |
Target: 5'- gGCCgcuacaaGGUGCUCGA---CCCGAACGa -3' miRNA: 3'- -CGGag-----CCGCGAGCUcauGGGCUUGUc -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 46026 | 0.67 | 0.621255 |
Target: 5'- uGCgCUCGGC-CUCGA--AUUCGAGCAGc -3' miRNA: 3'- -CG-GAGCCGcGAGCUcaUGGGCUUGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 31888 | 0.67 | 0.642678 |
Target: 5'- cGUC-CGGCGCgUCGAGcggguUGCCCGcgUAGc -3' miRNA: 3'- -CGGaGCCGCG-AGCUC-----AUGGGCuuGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 29565 | 0.67 | 0.621255 |
Target: 5'- -aCUCGGCGCccaugUCGAGcgugucGCCCGAagccgcgaucGCGGg -3' miRNA: 3'- cgGAGCCGCG-----AGCUCa-----UGGGCU----------UGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 35865 | 0.66 | 0.716857 |
Target: 5'- cGCCaUCGaGCGCUCGAacgGCgugugguucacgUCGGACAGg -3' miRNA: 3'- -CGG-AGC-CGCGAGCUca-UG------------GGCUUGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 9594 | 0.66 | 0.695905 |
Target: 5'- cGgCUCgcgcgGGCGCUgGAGcacgcGCUCGGACAGg -3' miRNA: 3'- -CgGAG-----CCGCGAgCUCa----UGGGCUUGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 5042 | 0.66 | 0.716857 |
Target: 5'- cGCCggcCGGCGCcugaucggCGGGcagGCCCGcGGCGGc -3' miRNA: 3'- -CGGa--GCCGCGa-------GCUCa--UGGGC-UUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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