Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24107 | 3' | -56.7 | NC_005262.1 | + | 9594 | 0.66 | 0.695905 |
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Target: 5'- cGgCUCgcgcgGGCGCUgGAGcacgcGCUCGGACAGg -3' miRNA: 3'- -CgGAG-----CCGCGAgCUCa----UGGGCUUGUC- -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 6755 | 0.66 | 0.695905 |
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Target: 5'- cGCCUCGuuGUGCUCGuGg--CCGGGCAc -3' miRNA: 3'- -CGGAGC--CGCGAGCuCaugGGCUUGUc -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 33499 | 0.66 | 0.706416 |
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Target: 5'- gGCCU-GaCGCUCGAGgACUgGAACGGc -3' miRNA: 3'- -CGGAgCcGCGAGCUCaUGGgCUUGUC- -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 19460 | 0.66 | 0.706416 |
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Target: 5'- gGCCUCGaUGCUCaccgGAcGgcCCCGAAUAGg -3' miRNA: 3'- -CGGAGCcGCGAG----CU-CauGGGCUUGUC- -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 53726 | 0.66 | 0.714775 |
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Target: 5'- gGCCgUGGCGCUCGAacgcgacuucaACCCGAcccACAa -3' miRNA: 3'- -CGGaGCCGCGAGCUca---------UGGGCU---UGUc -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 43236 | 0.66 | 0.716857 |
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Target: 5'- uCCUCguguGGCGCUCGAagcaGUACgUCGuGCAGa -3' miRNA: 3'- cGGAG----CCGCGAGCU----CAUG-GGCuUGUC- -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 5042 | 0.66 | 0.716857 |
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Target: 5'- cGCCggcCGGCGCcugaucggCGGGcagGCCCGcGGCGGc -3' miRNA: 3'- -CGGa--GCCGCGa-------GCUCa--UGGGC-UUGUC- -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 35865 | 0.66 | 0.716857 |
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Target: 5'- cGCCaUCGaGCGCUCGAacgGCgugugguucacgUCGGACAGg -3' miRNA: 3'- -CGG-AGC-CGCGAGCUca-UG------------GGCUUGUC- -5' |
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| 24107 | 3' | -56.7 | NC_005262.1 | + | 20737 | 0.66 | 0.716857 |
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Target: 5'- -gCUCGGCaGCUCGAccccUGCCCGGuCGa -3' miRNA: 3'- cgGAGCCG-CGAGCUc---AUGGGCUuGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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