miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24107 3' -56.7 NC_005262.1 + 25803 0.67 0.621255
Target:  5'- gGCa--GGCGCcCGAGUACCgGAugGa -3'
miRNA:   3'- -CGgagCCGCGaGCUCAUGGgCUugUc -5'
24107 3' -56.7 NC_005262.1 + 26780 0.66 0.694851
Target:  5'- cGCUUCGGCacauggcggauucGCUUGAGgcGCCCGGccuuGCAu -3'
miRNA:   3'- -CGGAGCCG-------------CGAGCUCa-UGGGCU----UGUc -5'
24107 3' -56.7 NC_005262.1 + 26815 0.73 0.317752
Target:  5'- uUCUUGGgGCUCGGGUcgauACCCGAuacgaGCAGc -3'
miRNA:   3'- cGGAGCCgCGAGCUCA----UGGGCU-----UGUC- -5'
24107 3' -56.7 NC_005262.1 + 29565 0.67 0.621255
Target:  5'- -aCUCGGCGCccaugUCGAGcgugucGCCCGAagccgcgaucGCGGg -3'
miRNA:   3'- cgGAGCCGCG-----AGCUCa-----UGGGCU----------UGUC- -5'
24107 3' -56.7 NC_005262.1 + 30502 0.68 0.599869
Target:  5'- gGCUUCGGCGCcCGGcGUGCgCGcgauGCGGu -3'
miRNA:   3'- -CGGAGCCGCGaGCU-CAUGgGCu---UGUC- -5'
24107 3' -56.7 NC_005262.1 + 31888 0.67 0.642678
Target:  5'- cGUC-CGGCGCgUCGAGcggguUGCCCGcgUAGc -3'
miRNA:   3'- -CGGaGCCGCG-AGCUC-----AUGGGCuuGUC- -5'
24107 3' -56.7 NC_005262.1 + 33499 0.66 0.706416
Target:  5'- gGCCU-GaCGCUCGAGgACUgGAACGGc -3'
miRNA:   3'- -CGGAgCcGCGAGCUCaUGGgCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 33505 0.7 0.48568
Target:  5'- gGCCUUGucgacagcGCGCUCGAuUGCCCGcuCGGc -3'
miRNA:   3'- -CGGAGC--------CGCGAGCUcAUGGGCuuGUC- -5'
24107 3' -56.7 NC_005262.1 + 34473 0.74 0.261328
Target:  5'- aGCCUaCGGCGUUCGAGcacAUCCGcGCGGc -3'
miRNA:   3'- -CGGA-GCCGCGAGCUCa--UGGGCuUGUC- -5'
24107 3' -56.7 NC_005262.1 + 35865 0.66 0.716857
Target:  5'- cGCCaUCGaGCGCUCGAacgGCgugugguucacgUCGGACAGg -3'
miRNA:   3'- -CGG-AGC-CGCGAGCUca-UG------------GGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 36603 0.67 0.636251
Target:  5'- cGCUUCGGCGCaaaggggaaugcgguUCG-GUugCUGGAUGGc -3'
miRNA:   3'- -CGGAGCCGCG---------------AGCuCAugGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 38889 0.68 0.599869
Target:  5'- uGCCUCGGCGUccUCcGGcUGgCCGAGCu- -3'
miRNA:   3'- -CGGAGCCGCG--AGcUC-AUgGGCUUGuc -5'
24107 3' -56.7 NC_005262.1 + 39895 0.68 0.566948
Target:  5'- cGCCUCGGCG-UCGAu--CCUGAcacgguaGCAGg -3'
miRNA:   3'- -CGGAGCCGCgAGCUcauGGGCU-------UGUC- -5'
24107 3' -56.7 NC_005262.1 + 41604 0.69 0.515971
Target:  5'- aCCUUGGCGCUCaGGGcAgCgGAACGGu -3'
miRNA:   3'- cGGAGCCGCGAG-CUCaUgGgCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 43037 0.69 0.495687
Target:  5'- aUCUCguGGCGCUgGGGUucgaCCGGGCAGg -3'
miRNA:   3'- cGGAG--CCGCGAgCUCAug--GGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 43236 0.66 0.716857
Target:  5'- uCCUCguguGGCGCUCGAagcaGUACgUCGuGCAGa -3'
miRNA:   3'- cGGAG----CCGCGAGCU----CAUG-GGCuUGUC- -5'
24107 3' -56.7 NC_005262.1 + 46026 0.67 0.621255
Target:  5'- uGCgCUCGGC-CUCGA--AUUCGAGCAGc -3'
miRNA:   3'- -CG-GAGCCGcGAGCUcaUGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 46258 0.74 0.267909
Target:  5'- cGCCUCGcGCGCgacCGcGUGCCCGuGCAu -3'
miRNA:   3'- -CGGAGC-CGCGa--GCuCAUGGGCuUGUc -5'
24107 3' -56.7 NC_005262.1 + 48400 0.68 0.58921
Target:  5'- cGCCUCGcugaaGCGCggCGAaauCCCGAACAc -3'
miRNA:   3'- -CGGAGC-----CGCGa-GCUcauGGGCUUGUc -5'
24107 3' -56.7 NC_005262.1 + 48563 0.67 0.610553
Target:  5'- gGCCgcuacaaGGUGCUCGA---CCCGAACGa -3'
miRNA:   3'- -CGGag-----CCGCGAGCUcauGGGCUUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.