miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24107 3' -56.7 NC_005262.1 + 34473 0.74 0.261328
Target:  5'- aGCCUaCGGCGUUCGAGcacAUCCGcGCGGc -3'
miRNA:   3'- -CGGA-GCCGCGAGCUCa--UGGGCuUGUC- -5'
24107 3' -56.7 NC_005262.1 + 33505 0.7 0.48568
Target:  5'- gGCCUUGucgacagcGCGCUCGAuUGCCCGcuCGGc -3'
miRNA:   3'- -CGGAGC--------CGCGAGCUcAUGGGCuuGUC- -5'
24107 3' -56.7 NC_005262.1 + 33499 0.66 0.706416
Target:  5'- gGCCU-GaCGCUCGAGgACUgGAACGGc -3'
miRNA:   3'- -CGGAgCcGCGAGCUCaUGGgCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 31888 0.67 0.642678
Target:  5'- cGUC-CGGCGCgUCGAGcggguUGCCCGcgUAGc -3'
miRNA:   3'- -CGGaGCCGCG-AGCUC-----AUGGGCuuGUC- -5'
24107 3' -56.7 NC_005262.1 + 30502 0.68 0.599869
Target:  5'- gGCUUCGGCGCcCGGcGUGCgCGcgauGCGGu -3'
miRNA:   3'- -CGGAGCCGCGaGCU-CAUGgGCu---UGUC- -5'
24107 3' -56.7 NC_005262.1 + 29565 0.67 0.621255
Target:  5'- -aCUCGGCGCccaugUCGAGcgugucGCCCGAagccgcgaucGCGGg -3'
miRNA:   3'- cgGAGCCGCG-----AGCUCa-----UGGGCU----------UGUC- -5'
24107 3' -56.7 NC_005262.1 + 26815 0.73 0.317752
Target:  5'- uUCUUGGgGCUCGGGUcgauACCCGAuacgaGCAGc -3'
miRNA:   3'- cGGAGCCgCGAGCUCA----UGGGCU-----UGUC- -5'
24107 3' -56.7 NC_005262.1 + 26780 0.66 0.694851
Target:  5'- cGCUUCGGCacauggcggauucGCUUGAGgcGCCCGGccuuGCAu -3'
miRNA:   3'- -CGGAGCCG-------------CGAGCUCa-UGGGCU----UGUc -5'
24107 3' -56.7 NC_005262.1 + 25803 0.67 0.621255
Target:  5'- gGCa--GGCGCcCGAGUACCgGAugGa -3'
miRNA:   3'- -CGgagCCGCGaGCUCAUGGgCUugUc -5'
24107 3' -56.7 NC_005262.1 + 22709 0.67 0.610553
Target:  5'- gGCCggCGGCGUUgaCGAgcGUGCCgGGACAc -3'
miRNA:   3'- -CGGa-GCCGCGA--GCU--CAUGGgCUUGUc -5'
24107 3' -56.7 NC_005262.1 + 21545 0.71 0.418588
Target:  5'- cGCCgcagugagcgCGGCGCUCGgcaucGGaACCgCGAGCGGg -3'
miRNA:   3'- -CGGa---------GCCGCGAGC-----UCaUGG-GCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 20737 0.66 0.716857
Target:  5'- -gCUCGGCaGCUCGAccccUGCCCGGuCGa -3'
miRNA:   3'- cgGAGCCG-CGAGCUc---AUGGGCUuGUc -5'
24107 3' -56.7 NC_005262.1 + 19460 0.66 0.706416
Target:  5'- gGCCUCGaUGCUCaccgGAcGgcCCCGAAUAGg -3'
miRNA:   3'- -CGGAGCcGCGAG----CU-CauGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 15715 0.69 0.505785
Target:  5'- cGCgUCGGCGC-CGGGcgGCUCGucgcGGCAGg -3'
miRNA:   3'- -CGgAGCCGCGaGCUCa-UGGGC----UUGUC- -5'
24107 3' -56.7 NC_005262.1 + 11630 0.7 0.446671
Target:  5'- cCCUCGGCG-UCGAG-GCCgGggUAGu -3'
miRNA:   3'- cGGAGCCGCgAGCUCaUGGgCuuGUC- -5'
24107 3' -56.7 NC_005262.1 + 11509 0.73 0.310224
Target:  5'- -gCUCGGCuGCaUCGuGUGCCUGAACAu -3'
miRNA:   3'- cgGAGCCG-CG-AGCuCAUGGGCUUGUc -5'
24107 3' -56.7 NC_005262.1 + 9758 0.72 0.341155
Target:  5'- cGCC-CGuGCGCUCGAugGUGCUguaggCGAGCAGg -3'
miRNA:   3'- -CGGaGC-CGCGAGCU--CAUGG-----GCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 9594 0.66 0.695905
Target:  5'- cGgCUCgcgcgGGCGCUgGAGcacgcGCUCGGACAGg -3'
miRNA:   3'- -CgGAG-----CCGCGAgCUCa----UGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 9039 0.68 0.599869
Target:  5'- cGCCUCGGCG-UCGAcGUGcguuuucccuuCCUGAucGCGGa -3'
miRNA:   3'- -CGGAGCCGCgAGCU-CAU-----------GGGCU--UGUC- -5'
24107 3' -56.7 NC_005262.1 + 8380 0.79 0.136069
Target:  5'- cGCCUccagcCGGCGCUCGAGcUGCUCGAuGCGGc -3'
miRNA:   3'- -CGGA-----GCCGCGAGCUC-AUGGGCU-UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.