miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24107 3' -56.7 NC_005262.1 + 39895 0.68 0.566948
Target:  5'- cGCCUCGGCG-UCGAu--CCUGAcacgguaGCAGg -3'
miRNA:   3'- -CGGAGCCGCgAGCUcauGGGCU-------UGUC- -5'
24107 3' -56.7 NC_005262.1 + 9758 0.72 0.341155
Target:  5'- cGCC-CGuGCGCUCGAugGUGCUguaggCGAGCAGg -3'
miRNA:   3'- -CGGaGC-CGCGAGCU--CAUGG-----GCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 8380 0.79 0.136069
Target:  5'- cGCCUccagcCGGCGCUCGAGcUGCUCGAuGCGGc -3'
miRNA:   3'- -CGGA-----GCCGCGAGCUC-AUGGGCU-UGUC- -5'
24107 3' -56.7 NC_005262.1 + 60391 0.71 0.42783
Target:  5'- cGgCUCGcCGuCUCGAuGUACCUGGACGGg -3'
miRNA:   3'- -CgGAGCcGC-GAGCU-CAUGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 43236 0.66 0.716857
Target:  5'- uCCUCguguGGCGCUCGAagcaGUACgUCGuGCAGa -3'
miRNA:   3'- cGGAG----CCGCGAGCU----CAUG-GGCuUGUC- -5'
24107 3' -56.7 NC_005262.1 + 6755 0.66 0.695905
Target:  5'- cGCCUCGuuGUGCUCGuGg--CCGGGCAc -3'
miRNA:   3'- -CGGAGC--CGCGAGCuCaugGGCUUGUc -5'
24107 3' -56.7 NC_005262.1 + 11509 0.73 0.310224
Target:  5'- -gCUCGGCuGCaUCGuGUGCCUGAACAu -3'
miRNA:   3'- cgGAGCCG-CG-AGCuCAUGGGCUUGUc -5'
24107 3' -56.7 NC_005262.1 + 19460 0.66 0.706416
Target:  5'- gGCCUCGaUGCUCaccgGAcGgcCCCGAAUAGg -3'
miRNA:   3'- -CGGAGCcGCGAG----CU-CauGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 60331 0.71 0.42783
Target:  5'- cGCCUaCGGCGCgcgCGGcUACCUGAaggACGGc -3'
miRNA:   3'- -CGGA-GCCGCGa--GCUcAUGGGCU---UGUC- -5'
24107 3' -56.7 NC_005262.1 + 58651 0.7 0.465964
Target:  5'- gGCCg-GGCGCgCGAGUucuacgaucaaGCCCGAGCc- -3'
miRNA:   3'- -CGGagCCGCGaGCUCA-----------UGGGCUUGuc -5'
24107 3' -56.7 NC_005262.1 + 36603 0.67 0.636251
Target:  5'- cGCUUCGGCGCaaaggggaaugcgguUCG-GUugCUGGAUGGc -3'
miRNA:   3'- -CGGAGCCGCG---------------AGCuCAugGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 7289 0.7 0.475771
Target:  5'- cGCCgauucgagCGGCacguucucGCgCGAGUacgGCCCGGACAGa -3'
miRNA:   3'- -CGGa-------GCCG--------CGaGCUCA---UGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 53726 0.66 0.714775
Target:  5'- gGCCgUGGCGCUCGAacgcgacuucaACCCGAcccACAa -3'
miRNA:   3'- -CGGaGCCGCGAGCUca---------UGGGCU---UGUc -5'
24107 3' -56.7 NC_005262.1 + 20737 0.66 0.716857
Target:  5'- -gCUCGGCaGCUCGAccccUGCCCGGuCGa -3'
miRNA:   3'- cgGAGCCG-CGAGCUc---AUGGGCUuGUc -5'
24107 3' -56.7 NC_005262.1 + 2828 0.68 0.568004
Target:  5'- cGCCUCGaccucguuugcGCGCUgGcGUGCCCGcACGa -3'
miRNA:   3'- -CGGAGC-----------CGCGAgCuCAUGGGCuUGUc -5'
24107 3' -56.7 NC_005262.1 + 5042 0.66 0.716857
Target:  5'- cGCCggcCGGCGCcugaucggCGGGcagGCCCGcGGCGGc -3'
miRNA:   3'- -CGGa--GCCGCGa-------GCUCa--UGGGC-UUGUC- -5'
24107 3' -56.7 NC_005262.1 + 3433 0.68 0.599869
Target:  5'- cGCUUCaGcGCGCUCGGGgaucaGCUCGAACc- -3'
miRNA:   3'- -CGGAG-C-CGCGAGCUCa----UGGGCUUGuc -5'
24107 3' -56.7 NC_005262.1 + 48563 0.67 0.610553
Target:  5'- gGCCgcuacaaGGUGCUCGA---CCCGAACGa -3'
miRNA:   3'- -CGGag-----CCGCGAGCUcauGGGCUUGUc -5'
24107 3' -56.7 NC_005262.1 + 25803 0.67 0.621255
Target:  5'- gGCa--GGCGCcCGAGUACCgGAugGa -3'
miRNA:   3'- -CGgagCCGCGaGCUCAUGGgCUugUc -5'
24107 3' -56.7 NC_005262.1 + 33499 0.66 0.706416
Target:  5'- gGCCU-GaCGCUCGAGgACUgGAACGGc -3'
miRNA:   3'- -CGGAgCcGCGAGCUCaUGGgCUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.