Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24107 | 3' | -56.7 | NC_005262.1 | + | 3433 | 0.68 | 0.599869 |
Target: 5'- cGCUUCaGcGCGCUCGGGgaucaGCUCGAACc- -3' miRNA: 3'- -CGGAG-C-CGCGAGCUCa----UGGGCUUGuc -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 38889 | 0.68 | 0.599869 |
Target: 5'- uGCCUCGGCGUccUCcGGcUGgCCGAGCu- -3' miRNA: 3'- -CGGAGCCGCG--AGcUC-AUgGGCUUGuc -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 9039 | 0.68 | 0.599869 |
Target: 5'- cGCCUCGGCG-UCGAcGUGcguuuucccuuCCUGAucGCGGa -3' miRNA: 3'- -CGGAGCCGCgAGCU-CAU-----------GGGCU--UGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 30502 | 0.68 | 0.599869 |
Target: 5'- gGCUUCGGCGCcCGGcGUGCgCGcgauGCGGu -3' miRNA: 3'- -CGGAGCCGCGaGCU-CAUGgGCu---UGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 48400 | 0.68 | 0.58921 |
Target: 5'- cGCCUCGcugaaGCGCggCGAaauCCCGAACAc -3' miRNA: 3'- -CGGAGC-----CGCGa-GCUcauGGGCUUGUc -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 2828 | 0.68 | 0.568004 |
Target: 5'- cGCCUCGaccucguuugcGCGCUgGcGUGCCCGcACGa -3' miRNA: 3'- -CGGAGC-----------CGCGAgCuCAUGGGCuUGUc -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 39895 | 0.68 | 0.566948 |
Target: 5'- cGCCUCGGCG-UCGAu--CCUGAcacgguaGCAGg -3' miRNA: 3'- -CGGAGCCGCgAGCUcauGGGCU-------UGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 56118 | 0.69 | 0.536582 |
Target: 5'- cGUUUCGucgacccgaccGCGC-CGAGcgACCCGAACAGc -3' miRNA: 3'- -CGGAGC-----------CGCGaGCUCa-UGGGCUUGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 48691 | 0.69 | 0.536582 |
Target: 5'- cGCCUUcagGGCGUcggguuUCGAGUugccuccgGCCCGAgGCGGg -3' miRNA: 3'- -CGGAG---CCGCG------AGCUCA--------UGGGCU-UGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 41604 | 0.69 | 0.515971 |
Target: 5'- aCCUUGGCGCUCaGGGcAgCgGAACGGu -3' miRNA: 3'- cGGAGCCGCGAG-CUCaUgGgCUUGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 15715 | 0.69 | 0.505785 |
Target: 5'- cGCgUCGGCGC-CGGGcgGCUCGucgcGGCAGg -3' miRNA: 3'- -CGgAGCCGCGaGCUCa-UGGGC----UUGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 43037 | 0.69 | 0.495687 |
Target: 5'- aUCUCguGGCGCUgGGGUucgaCCGGGCAGg -3' miRNA: 3'- cGGAG--CCGCGAgCUCAug--GGCUUGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 33505 | 0.7 | 0.48568 |
Target: 5'- gGCCUUGucgacagcGCGCUCGAuUGCCCGcuCGGc -3' miRNA: 3'- -CGGAGC--------CGCGAGCUcAUGGGCuuGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 7289 | 0.7 | 0.475771 |
Target: 5'- cGCCgauucgagCGGCacguucucGCgCGAGUacgGCCCGGACAGa -3' miRNA: 3'- -CGGa-------GCCG--------CGaGCUCA---UGGGCUUGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 58651 | 0.7 | 0.465964 |
Target: 5'- gGCCg-GGCGCgCGAGUucuacgaucaaGCCCGAGCc- -3' miRNA: 3'- -CGGagCCGCGaGCUCA-----------UGGGCUUGuc -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 11630 | 0.7 | 0.446671 |
Target: 5'- cCCUCGGCG-UCGAG-GCCgGggUAGu -3' miRNA: 3'- cGGAGCCGCgAGCUCaUGGgCuuGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 60331 | 0.71 | 0.42783 |
Target: 5'- cGCCUaCGGCGCgcgCGGcUACCUGAaggACGGc -3' miRNA: 3'- -CGGA-GCCGCGa--GCUcAUGGGCU---UGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 60391 | 0.71 | 0.42783 |
Target: 5'- cGgCUCGcCGuCUCGAuGUACCUGGACGGg -3' miRNA: 3'- -CgGAGCcGC-GAGCU-CAUGGGCUUGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 21545 | 0.71 | 0.418588 |
Target: 5'- cGCCgcagugagcgCGGCGCUCGgcaucGGaACCgCGAGCGGg -3' miRNA: 3'- -CGGa---------GCCGCGAGC-----UCaUGG-GCUUGUC- -5' |
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24107 | 3' | -56.7 | NC_005262.1 | + | 1353 | 0.71 | 0.418588 |
Target: 5'- cGCCUCGGUGg-CGAGauUGCCCccACAGg -3' miRNA: 3'- -CGGAGCCGCgaGCUC--AUGGGcuUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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