Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24108 | 3' | -58.5 | NC_005262.1 | + | 16051 | 0.71 | 0.326939 |
Target: 5'- gGGUU--CGCCGCGGCcggCGGCGCa -3' miRNA: 3'- gCCAGucGCGGCGUCGuaaGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 15095 | 0.71 | 0.31928 |
Target: 5'- aCGcGUCuuucuGCGgCGCGGCGUcCGGCugGa -3' miRNA: 3'- -GC-CAGu----CGCgGCGUCGUAaGCCGugC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 54296 | 0.71 | 0.307306 |
Target: 5'- gCGGUCGG-GCCGCAaaucgcaccagugguGCGgaaUCGGCACc -3' miRNA: 3'- -GCCAGUCgCGGCGU---------------CGUa--AGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 46379 | 0.71 | 0.297113 |
Target: 5'- aGGUCguccagcguGGCGCC-CAGCGUcUCGGCAUu -3' miRNA: 3'- gCCAG---------UCGCGGcGUCGUA-AGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 22345 | 0.71 | 0.309524 |
Target: 5'- gCGGUCAgcguaacgguagccGCGCCGCccguGUuagUCGGCGCa -3' miRNA: 3'- -GCCAGU--------------CGCGGCGu---CGua-AGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 46697 | 0.71 | 0.289994 |
Target: 5'- -aGUCAGCGCCGCGcgcGCAguggacaagcCGGCGCa -3' miRNA: 3'- gcCAGUCGCGGCGU---CGUaa--------GCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 55966 | 0.71 | 0.297113 |
Target: 5'- uGGUCA-CGCCGgAGcCGUUCGGCuACa -3' miRNA: 3'- gCCAGUcGCGGCgUC-GUAAGCCG-UGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 17338 | 0.71 | 0.304367 |
Target: 5'- uGGcCGGCGCgGCAuucggguccggcGCGggCGGCGCGg -3' miRNA: 3'- gCCaGUCGCGgCGU------------CGUaaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 23084 | 0.71 | 0.31928 |
Target: 5'- gGcGUCAGCGCCGCcGUAUUaUGGCcguGCGa -3' miRNA: 3'- gC-CAGUCGCGGCGuCGUAA-GCCG---UGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 42240 | 0.7 | 0.334734 |
Target: 5'- gCGGUUccgaugccgAGCGCCGCgcucacugcGGCGacgagCGGCACGg -3' miRNA: 3'- -GCCAG---------UCGCGGCG---------UCGUaa---GCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 12325 | 0.7 | 0.342665 |
Target: 5'- gCGGcUC-GUGCCGCAGCGcgCGGCGg- -3' miRNA: 3'- -GCC-AGuCGCGGCGUCGUaaGCCGUgc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 49153 | 0.7 | 0.345874 |
Target: 5'- aCGGUgGGCgugcaggccgcaucgGCCGCAGCgg-CGcGCACGg -3' miRNA: 3'- -GCCAgUCG---------------CGGCGUCGuaaGC-CGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 5062 | 0.7 | 0.350729 |
Target: 5'- gCGGgcaGGC-CCGCGGCgg-CGGCGCGu -3' miRNA: 3'- -GCCag-UCGcGGCGUCGuaaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 58947 | 0.7 | 0.365583 |
Target: 5'- uCGGUCGGCG-CGCAGCAgucgaaccagcCGGC-CGc -3' miRNA: 3'- -GCCAGUCGCgGCGUCGUaa---------GCCGuGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 15714 | 0.7 | 0.334734 |
Target: 5'- gCGcGUCGGCGCCggGCGGCucgucgCGGCAgGu -3' miRNA: 3'- -GC-CAGUCGCGG--CGUCGuaa---GCCGUgC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 30500 | 0.7 | 0.342665 |
Target: 5'- aCGGcuUCGGCGCC-CGGCGUgcgcgcgaugCGGUACGc -3' miRNA: 3'- -GCC--AGUCGCGGcGUCGUAa---------GCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 36337 | 0.7 | 0.36726 |
Target: 5'- cCGGUgCGuGCGCCGUcaGGCuugaucgaUCGGCACGu -3' miRNA: 3'- -GCCA-GU-CGCGGCG--UCGua------AGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 19623 | 0.69 | 0.393042 |
Target: 5'- gCGGUCGGCGUC-CAGCc--CGGCAa- -3' miRNA: 3'- -GCCAGUCGCGGcGUCGuaaGCCGUgc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 10559 | 0.69 | 0.423646 |
Target: 5'- cCGGcCGcgcGCaGCCGCAGCGUaccgcggagcagcgCGGCGCGa -3' miRNA: 3'- -GCCaGU---CG-CGGCGUCGUAa-------------GCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 36528 | 0.69 | 0.429193 |
Target: 5'- aCGGUCGGCGCgGCgacuGGgAUUaucgGGCGCa -3' miRNA: 3'- -GCCAGUCGCGgCG----UCgUAAg---CCGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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