miRNA display CGI


Results 41 - 60 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 10559 0.69 0.423646
Target:  5'- cCGGcCGcgcGCaGCCGCAGCGUaccgcggagcagcgCGGCGCGa -3'
miRNA:   3'- -GCCaGU---CG-CGGCGUCGUAa-------------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 36528 0.69 0.429193
Target:  5'- aCGGUCGGCGCgGCgacuGGgAUUaucgGGCGCa -3'
miRNA:   3'- -GCCAGUCGCGgCG----UCgUAAg---CCGUGc -5'
24108 3' -58.5 NC_005262.1 + 17262 0.69 0.401894
Target:  5'- gCGGcCGGCGCCGCgcugGGCug-CuGCGCGg -3'
miRNA:   3'- -GCCaGUCGCGGCG----UCGuaaGcCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 5590 0.69 0.419972
Target:  5'- aCGGgCGGCGCCGCucuccGCAggCGaCGCGg -3'
miRNA:   3'- -GCCaGUCGCGGCGu----CGUaaGCcGUGC- -5'
24108 3' -58.5 NC_005262.1 + 15176 0.69 0.401894
Target:  5'- aCGGcacgCAGCGCuaCGCGGCGUUCugcaaGGCgACGa -3'
miRNA:   3'- -GCCa---GUCGCG--GCGUCGUAAG-----CCG-UGC- -5'
24108 3' -58.5 NC_005262.1 + 43854 0.69 0.401894
Target:  5'- gCGGU--GCGCCgGCAGgAccUCGGCGCGa -3'
miRNA:   3'- -GCCAguCGCGG-CGUCgUa-AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 23902 0.69 0.393042
Target:  5'- cCGuGUCAGgaucgaCGCCGaGGCGUUCGGCAa- -3'
miRNA:   3'- -GC-CAGUC------GCGGCgUCGUAAGCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 19623 0.69 0.393042
Target:  5'- gCGGUCGGCGUC-CAGCc--CGGCAa- -3'
miRNA:   3'- -GCCAGUCGCGGcGUCGuaaGCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 8956 0.69 0.429193
Target:  5'- cCGGUCGGCG-CGCuGCGUgUCGGUcCa -3'
miRNA:   3'- -GCCAGUCGCgGCGuCGUA-AGCCGuGc -5'
24108 3' -58.5 NC_005262.1 + 14003 0.69 0.384318
Target:  5'- cCGGaCGGUGCaGgGGCGUcCGGCGCGg -3'
miRNA:   3'- -GCCaGUCGCGgCgUCGUAaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 62555 0.69 0.429193
Target:  5'- cCGcUCAGCGCCGaAGCAcUUCGG-ACGg -3'
miRNA:   3'- -GCcAGUCGCGGCgUCGU-AAGCCgUGC- -5'
24108 3' -58.5 NC_005262.1 + 32743 0.69 0.419972
Target:  5'- gCGcGUCGGCGUCGgucagcacCAGCAggCGGUACu -3'
miRNA:   3'- -GC-CAGUCGCGGC--------GUCGUaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 9301 0.69 0.429193
Target:  5'- uCGGUCGG-GCCcaGCGGC-UUCGGCuGCa -3'
miRNA:   3'- -GCCAGUCgCGG--CGUCGuAAGCCG-UGc -5'
24108 3' -58.5 NC_005262.1 + 28412 0.69 0.428266
Target:  5'- gCGGUauugAGCGCCGCgugcgccAGCAUauuuccgccggUCGGUGCGu -3'
miRNA:   3'- -GCCAg---UCGCGGCG-------UCGUA-----------AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 35656 0.68 0.465286
Target:  5'- gGGcuacUCGGUGCCGCAGCucgugcucacgUCgagcgGGCACGg -3'
miRNA:   3'- gCC----AGUCGCGGCGUCGua---------AG-----CCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 13430 0.68 0.477009
Target:  5'- aCGGUCGacgaauGCGCCGCucGCggUCGuCGCGg -3'
miRNA:   3'- -GCCAGU------CGCGGCGu-CGuaAGCcGUGC- -5'
24108 3' -58.5 NC_005262.1 + 32175 0.68 0.486889
Target:  5'- aGGUCGGCuuGCCGC-GCAggu-GCACGg -3'
miRNA:   3'- gCCAGUCG--CGGCGuCGUaagcCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 59210 0.68 0.487882
Target:  5'- gCGGgcgcucacgcccgagCAGCGCCGCcGC---UGGCGCGa -3'
miRNA:   3'- -GCCa--------------GUCGCGGCGuCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 13677 0.68 0.489872
Target:  5'- uCGGUCAGCGagCGCucGGCcggcuucuguucgcgCGGCGCGg -3'
miRNA:   3'- -GCCAGUCGCg-GCG--UCGuaa------------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 48956 0.68 0.466257
Target:  5'- uGGUCGccagcauGaCGCCGCAgauGCAggCGGCGCu -3'
miRNA:   3'- gCCAGU-------C-GCGGCGU---CGUaaGCCGUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.