Results 101 - 113 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24108 | 3' | -58.5 | NC_005262.1 | + | 7530 | 0.66 | 0.590056 |
Target: 5'- aGGuUCGGCGgCGCG----UCGGCGCGc -3' miRNA: 3'- gCC-AGUCGCgGCGUcguaAGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 33320 | 0.66 | 0.588996 |
Target: 5'- aGGauuUCGGCGCCGUcgauguuGGCGUUcucCGGCuucGCGg -3' miRNA: 3'- gCC---AGUCGCGGCG-------UCGUAA---GCCG---UGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 50846 | 0.66 | 0.588996 |
Target: 5'- cCGGUCGGCgauGCCGUcGCGcacgcccUUCaGCGCGc -3' miRNA: 3'- -GCCAGUCG---CGGCGuCGU-------AAGcCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 12502 | 0.66 | 0.590056 |
Target: 5'- uGGUCgAGCGgcaugCGCAGCAgccggCGGC-CGg -3' miRNA: 3'- gCCAG-UCGCg----GCGUCGUaa---GCCGuGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 52140 | 0.66 | 0.590056 |
Target: 5'- cCGGcCAGCG-UGCAGCGcgacgcCGGCGCc -3' miRNA: 3'- -GCCaGUCGCgGCGUCGUaa----GCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 16083 | 0.66 | 0.600673 |
Target: 5'- aGG-CGGCgaGCCGCcGCc--CGGCGCGg -3' miRNA: 3'- gCCaGUCG--CGGCGuCGuaaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 48303 | 0.66 | 0.600673 |
Target: 5'- cCGGUgAGCgaGCCGCcGCGcUCGGUguaaGCGc -3' miRNA: 3'- -GCCAgUCG--CGGCGuCGUaAGCCG----UGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 53004 | 0.66 | 0.575252 |
Target: 5'- gCGG-CAGCuCgCGCAGCAguaccgcgcgccCGGCGCGg -3' miRNA: 3'- -GCCaGUCGcG-GCGUCGUaa----------GCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 40994 | 0.66 | 0.600673 |
Target: 5'- gCGG-CGGCGCuCGCuGCugaUGGCACc -3' miRNA: 3'- -GCCaGUCGCG-GCGuCGuaaGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 36730 | 0.66 | 0.600673 |
Target: 5'- gGGcUGGCGCCGCGGgcgcaGUUCuGCGCa -3' miRNA: 3'- gCCaGUCGCGGCGUCg----UAAGcCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 24205 | 0.66 | 0.590056 |
Target: 5'- aGG-CGGCaGCCGCGacGCugcgcCGGCACGc -3' miRNA: 3'- gCCaGUCG-CGGCGU--CGuaa--GCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 14536 | 0.66 | 0.590056 |
Target: 5'- uGG-CAGUGCCGU-GCAUgcgcuggaUCGGCAgGc -3' miRNA: 3'- gCCaGUCGCGGCGuCGUA--------AGCCGUgC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 50740 | 0.66 | 0.600673 |
Target: 5'- cCGGUCaAGCcacaaucgGCCGCAGCucgaCGcGCACc -3' miRNA: 3'- -GCCAG-UCG--------CGGCGUCGuaa-GC-CGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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