Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24108 | 3' | -58.5 | NC_005262.1 | + | 23902 | 0.69 | 0.393042 |
Target: 5'- cCGuGUCAGgaucgaCGCCGaGGCGUUCGGCAa- -3' miRNA: 3'- -GC-CAGUC------GCGGCgUCGUAAGCCGUgc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 19623 | 0.69 | 0.393042 |
Target: 5'- gCGGUCGGCGUC-CAGCc--CGGCAa- -3' miRNA: 3'- -GCCAGUCGCGGcGUCGuaaGCCGUgc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 15176 | 0.69 | 0.401894 |
Target: 5'- aCGGcacgCAGCGCuaCGCGGCGUUCugcaaGGCgACGa -3' miRNA: 3'- -GCCa---GUCGCG--GCGUCGUAAG-----CCG-UGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 17262 | 0.69 | 0.401894 |
Target: 5'- gCGGcCGGCGCCGCgcugGGCug-CuGCGCGg -3' miRNA: 3'- -GCCaGUCGCGGCG----UCGuaaGcCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 43854 | 0.69 | 0.401894 |
Target: 5'- gCGGU--GCGCCgGCAGgAccUCGGCGCGa -3' miRNA: 3'- -GCCAguCGCGG-CGUCgUa-AGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 58665 | 0.69 | 0.419972 |
Target: 5'- aGGaUCAGCGCCGC--CcgUCGcGCAUGg -3' miRNA: 3'- gCC-AGUCGCGGCGucGuaAGC-CGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 5590 | 0.69 | 0.419972 |
Target: 5'- aCGGgCGGCGCCGCucuccGCAggCGaCGCGg -3' miRNA: 3'- -GCCaGUCGCGGCGu----CGUaaGCcGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 32743 | 0.69 | 0.419972 |
Target: 5'- gCGcGUCGGCGUCGgucagcacCAGCAggCGGUACu -3' miRNA: 3'- -GC-CAGUCGCGGC--------GUCGUaaGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 10559 | 0.69 | 0.423646 |
Target: 5'- cCGGcCGcgcGCaGCCGCAGCGUaccgcggagcagcgCGGCGCGa -3' miRNA: 3'- -GCCaGU---CG-CGGCGUCGUAa-------------GCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 28412 | 0.69 | 0.428266 |
Target: 5'- gCGGUauugAGCGCCGCgugcgccAGCAUauuuccgccggUCGGUGCGu -3' miRNA: 3'- -GCCAg---UCGCGGCG-------UCGUA-----------AGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 8956 | 0.69 | 0.429193 |
Target: 5'- cCGGUCGGCG-CGCuGCGUgUCGGUcCa -3' miRNA: 3'- -GCCAGUCGCgGCGuCGUA-AGCCGuGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 62555 | 0.69 | 0.429193 |
Target: 5'- cCGcUCAGCGCCGaAGCAcUUCGG-ACGg -3' miRNA: 3'- -GCcAGUCGCGGCgUCGU-AAGCCgUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 36528 | 0.69 | 0.429193 |
Target: 5'- aCGGUCGGCGCgGCgacuGGgAUUaucgGGCGCa -3' miRNA: 3'- -GCCAGUCGCGgCG----UCgUAAg---CCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 9301 | 0.69 | 0.429193 |
Target: 5'- uCGGUCGG-GCCcaGCGGC-UUCGGCuGCa -3' miRNA: 3'- -GCCAGUCgCGG--CGUCGuAAGCCG-UGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 35840 | 0.68 | 0.438533 |
Target: 5'- gGcGUCGGCGCCGCGaccGCccagauGUUUGuGCGCGg -3' miRNA: 3'- gC-CAGUCGCGGCGU---CG------UAAGC-CGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 52388 | 0.68 | 0.438533 |
Target: 5'- gCGGccCGGCGCggCGCGGC-UUCGGCGUGg -3' miRNA: 3'- -GCCa-GUCGCG--GCGUCGuAAGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 21686 | 0.68 | 0.447988 |
Target: 5'- gCGG-CGGCGCCGCGcuGCuguacgCGgGCACGc -3' miRNA: 3'- -GCCaGUCGCGGCGU--CGuaa---GC-CGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 50406 | 0.68 | 0.454673 |
Target: 5'- gCGGcgaUCAGCGCCGCGGagcgcgagggccgCGuGCACGu -3' miRNA: 3'- -GCC---AGUCGCGGCGUCguaa---------GC-CGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 4974 | 0.68 | 0.455632 |
Target: 5'- ----aAGCGCCGCAGCAgccagccuucaCGGCGCc -3' miRNA: 3'- gccagUCGCGGCGUCGUaa---------GCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 34006 | 0.68 | 0.457555 |
Target: 5'- aGGUUgcuggGGUGCCGCGcCGUcCGGCACu -3' miRNA: 3'- gCCAG-----UCGCGGCGUcGUAaGCCGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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