miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 13142 0.67 0.517084
Target:  5'- aGGUCcgccGCGCgCGCuGCg--CGGCACa -3'
miRNA:   3'- gCCAGu---CGCG-GCGuCGuaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 13722 0.67 0.517084
Target:  5'- uCGGUCGGCGCaGCGGCcUUCGuCucCGg -3'
miRNA:   3'- -GCCAGUCGCGgCGUCGuAAGCcGu-GC- -5'
24108 3' -58.5 NC_005262.1 + 19528 0.67 0.517084
Target:  5'- gCGGUCAGaaaauCGCgCGuCAGCcagUGGCGCGa -3'
miRNA:   3'- -GCCAGUC-----GCG-GC-GUCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 23228 0.67 0.517084
Target:  5'- aCGGUCgcGGCaccGCCGguGUugccCGGCGCGu -3'
miRNA:   3'- -GCCAG--UCG---CGGCguCGuaa-GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 50940 0.67 0.517084
Target:  5'- aCGG-CAGCGCga-AGC--UCGGCACGa -3'
miRNA:   3'- -GCCaGUCGCGgcgUCGuaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 39590 0.67 0.517084
Target:  5'- cCGGcgCAGCGUCGCGGCugccgccUCGG-GCGu -3'
miRNA:   3'- -GCCa-GUCGCGGCGUCGua-----AGCCgUGC- -5'
24108 3' -58.5 NC_005262.1 + 2776 0.67 0.527317
Target:  5'- gCGGUUAGCagacgucucgGCgaGCGGCuugaugacggUCGGCACGg -3'
miRNA:   3'- -GCCAGUCG----------CGg-CGUCGua--------AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 5084 0.67 0.527317
Target:  5'- gCGGUCAGCgccucgggcauGCCGcCAGCuugUUGcGCGCu -3'
miRNA:   3'- -GCCAGUCG-----------CGGC-GUCGua-AGC-CGUGc -5'
24108 3' -58.5 NC_005262.1 + 41218 0.67 0.537624
Target:  5'- ---gCAGCGCCGC-GCAUgCGGC-CGc -3'
miRNA:   3'- gccaGUCGCGGCGuCGUAaGCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 18720 0.67 0.537624
Target:  5'- gGcGUCaaGGCGCUccuCAGC-UUCGGCGCGg -3'
miRNA:   3'- gC-CAG--UCGCGGc--GUCGuAAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 53455 0.67 0.54696
Target:  5'- gCGGcgcCGGCGUCGaggacaaCGGCGUgaaguggcUCGGCACGg -3'
miRNA:   3'- -GCCa--GUCGCGGC-------GUCGUA--------AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 22572 0.67 0.548
Target:  5'- cCGGccUUAGCgGCCGCAuGCg--CGGCGCu -3'
miRNA:   3'- -GCC--AGUCG-CGGCGU-CGuaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 45709 0.67 0.548
Target:  5'- cCGG-CAGCcgGCCGUgaucgAGCAgUUCGGCAUc -3'
miRNA:   3'- -GCCaGUCG--CGGCG-----UCGU-AAGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 7011 0.67 0.548
Target:  5'- ---aCAGCGCgGCGGC-UUCGGUggACGu -3'
miRNA:   3'- gccaGUCGCGgCGUCGuAAGCCG--UGC- -5'
24108 3' -58.5 NC_005262.1 + 15145 0.66 0.558438
Target:  5'- gCGGcCGGCGUCGag----UCGGCGCGg -3'
miRNA:   3'- -GCCaGUCGCGGCgucguaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 20094 0.66 0.558438
Target:  5'- uCGGUgAGCGCguCGCcGCGcgaaUUCGGCcCGg -3'
miRNA:   3'- -GCCAgUCGCG--GCGuCGU----AAGCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 46907 0.66 0.568932
Target:  5'- gCGGUgCGGUGUggUGCGGCc--CGGCGCGc -3'
miRNA:   3'- -GCCA-GUCGCG--GCGUCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 40295 0.66 0.568932
Target:  5'- aGGgaaCGGgGCCGCAGCAguucaacccCGGCGa- -3'
miRNA:   3'- gCCa--GUCgCGGCGUCGUaa-------GCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 53004 0.66 0.575252
Target:  5'- gCGG-CAGCuCgCGCAGCAguaccgcgcgccCGGCGCGg -3'
miRNA:   3'- -GCCaGUCGcG-GCGUCGUaa----------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 46115 0.66 0.579474
Target:  5'- aCGGcCGGCuucuucGCCGCuuccAGC--UCGGCGCGc -3'
miRNA:   3'- -GCCaGUCG------CGGCG----UCGuaAGCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.