Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24108 | 3' | -58.5 | NC_005262.1 | + | 9301 | 0.69 | 0.429193 |
Target: 5'- uCGGUCGG-GCCcaGCGGC-UUCGGCuGCa -3' miRNA: 3'- -GCCAGUCgCGG--CGUCGuAAGCCG-UGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 36528 | 0.69 | 0.429193 |
Target: 5'- aCGGUCGGCGCgGCgacuGGgAUUaucgGGCGCa -3' miRNA: 3'- -GCCAGUCGCGgCG----UCgUAAg---CCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 8956 | 0.69 | 0.429193 |
Target: 5'- cCGGUCGGCG-CGCuGCGUgUCGGUcCa -3' miRNA: 3'- -GCCAGUCGCgGCGuCGUA-AGCCGuGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 28412 | 0.69 | 0.428266 |
Target: 5'- gCGGUauugAGCGCCGCgugcgccAGCAUauuuccgccggUCGGUGCGu -3' miRNA: 3'- -GCCAg---UCGCGGCG-------UCGUA-----------AGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 10559 | 0.69 | 0.423646 |
Target: 5'- cCGGcCGcgcGCaGCCGCAGCGUaccgcggagcagcgCGGCGCGa -3' miRNA: 3'- -GCCaGU---CG-CGGCGUCGUAa-------------GCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 32743 | 0.69 | 0.419972 |
Target: 5'- gCGcGUCGGCGUCGgucagcacCAGCAggCGGUACu -3' miRNA: 3'- -GC-CAGUCGCGGC--------GUCGUaaGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 5590 | 0.69 | 0.419972 |
Target: 5'- aCGGgCGGCGCCGCucuccGCAggCGaCGCGg -3' miRNA: 3'- -GCCaGUCGCGGCGu----CGUaaGCcGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 58665 | 0.69 | 0.419972 |
Target: 5'- aGGaUCAGCGCCGC--CcgUCGcGCAUGg -3' miRNA: 3'- gCC-AGUCGCGGCGucGuaAGC-CGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 15176 | 0.69 | 0.401894 |
Target: 5'- aCGGcacgCAGCGCuaCGCGGCGUUCugcaaGGCgACGa -3' miRNA: 3'- -GCCa---GUCGCG--GCGUCGUAAG-----CCG-UGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 43854 | 0.69 | 0.401894 |
Target: 5'- gCGGU--GCGCCgGCAGgAccUCGGCGCGa -3' miRNA: 3'- -GCCAguCGCGG-CGUCgUa-AGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 17262 | 0.69 | 0.401894 |
Target: 5'- gCGGcCGGCGCCGCgcugGGCug-CuGCGCGg -3' miRNA: 3'- -GCCaGUCGCGGCG----UCGuaaGcCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 23902 | 0.69 | 0.393042 |
Target: 5'- cCGuGUCAGgaucgaCGCCGaGGCGUUCGGCAa- -3' miRNA: 3'- -GC-CAGUC------GCGGCgUCGUAAGCCGUgc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 19623 | 0.69 | 0.393042 |
Target: 5'- gCGGUCGGCGUC-CAGCc--CGGCAa- -3' miRNA: 3'- -GCCAGUCGCGGcGUCGuaaGCCGUgc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 63684 | 0.69 | 0.390412 |
Target: 5'- aGGUCGGuCGCCggccggugacaugcGCagaAGCGUgCGGCGCGg -3' miRNA: 3'- gCCAGUC-GCGG--------------CG---UCGUAaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 14003 | 0.69 | 0.384318 |
Target: 5'- cCGGaCGGUGCaGgGGCGUcCGGCGCGg -3' miRNA: 3'- -GCCaGUCGCGgCgUCGUAaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 10460 | 0.69 | 0.384318 |
Target: 5'- gCGGUCGGCGagGUAGCgg-CGcGCGCGg -3' miRNA: 3'- -GCCAGUCGCggCGUCGuaaGC-CGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 36337 | 0.7 | 0.36726 |
Target: 5'- cCGGUgCGuGCGCCGUcaGGCuugaucgaUCGGCACGu -3' miRNA: 3'- -GCCA-GU-CGCGGCG--UCGua------AGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 58947 | 0.7 | 0.365583 |
Target: 5'- uCGGUCGGCG-CGCAGCAgucgaaccagcCGGC-CGc -3' miRNA: 3'- -GCCAGUCGCgGCGUCGUaa---------GCCGuGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 5062 | 0.7 | 0.350729 |
Target: 5'- gCGGgcaGGC-CCGCGGCgg-CGGCGCGu -3' miRNA: 3'- -GCCag-UCGcGGCGUCGuaaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 49153 | 0.7 | 0.345874 |
Target: 5'- aCGGUgGGCgugcaggccgcaucgGCCGCAGCgg-CGcGCACGg -3' miRNA: 3'- -GCCAgUCG---------------CGGCGUCGuaaGC-CGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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