miRNA display CGI


Results 81 - 100 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 12325 0.7 0.342665
Target:  5'- gCGGcUC-GUGCCGCAGCGcgCGGCGg- -3'
miRNA:   3'- -GCC-AGuCGCGGCGUCGUaaGCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 30500 0.7 0.342665
Target:  5'- aCGGcuUCGGCGCC-CGGCGUgcgcgcgaugCGGUACGc -3'
miRNA:   3'- -GCC--AGUCGCGGcGUCGUAa---------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 15714 0.7 0.334734
Target:  5'- gCGcGUCGGCGCCggGCGGCucgucgCGGCAgGu -3'
miRNA:   3'- -GC-CAGUCGCGG--CGUCGuaa---GCCGUgC- -5'
24108 3' -58.5 NC_005262.1 + 42240 0.7 0.334734
Target:  5'- gCGGUUccgaugccgAGCGCCGCgcucacugcGGCGacgagCGGCACGg -3'
miRNA:   3'- -GCCAG---------UCGCGGCG---------UCGUaa---GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 30025 0.71 0.326939
Target:  5'- aGGUCGGUa--GCGGCGaUCGGCAUGg -3'
miRNA:   3'- gCCAGUCGcggCGUCGUaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 16051 0.71 0.326939
Target:  5'- gGGUU--CGCCGCGGCcggCGGCGCa -3'
miRNA:   3'- gCCAGucGCGGCGUCGuaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 15095 0.71 0.31928
Target:  5'- aCGcGUCuuucuGCGgCGCGGCGUcCGGCugGa -3'
miRNA:   3'- -GC-CAGu----CGCgGCGUCGUAaGCCGugC- -5'
24108 3' -58.5 NC_005262.1 + 23084 0.71 0.31928
Target:  5'- gGcGUCAGCGCCGCcGUAUUaUGGCcguGCGa -3'
miRNA:   3'- gC-CAGUCGCGGCGuCGUAA-GCCG---UGC- -5'
24108 3' -58.5 NC_005262.1 + 22345 0.71 0.309524
Target:  5'- gCGGUCAgcguaacgguagccGCGCCGCccguGUuagUCGGCGCa -3'
miRNA:   3'- -GCCAGU--------------CGCGGCGu---CGua-AGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 54296 0.71 0.307306
Target:  5'- gCGGUCGG-GCCGCAaaucgcaccagugguGCGgaaUCGGCACc -3'
miRNA:   3'- -GCCAGUCgCGGCGU---------------CGUa--AGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 17338 0.71 0.304367
Target:  5'- uGGcCGGCGCgGCAuucggguccggcGCGggCGGCGCGg -3'
miRNA:   3'- gCCaGUCGCGgCGU------------CGUaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 46379 0.71 0.297113
Target:  5'- aGGUCguccagcguGGCGCC-CAGCGUcUCGGCAUu -3'
miRNA:   3'- gCCAG---------UCGCGGcGUCGUA-AGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 55966 0.71 0.297113
Target:  5'- uGGUCA-CGCCGgAGcCGUUCGGCuACa -3'
miRNA:   3'- gCCAGUcGCGGCgUC-GUAAGCCG-UGc -5'
24108 3' -58.5 NC_005262.1 + 46697 0.71 0.289994
Target:  5'- -aGUCAGCGCCGCGcgcGCAguggacaagcCGGCGCa -3'
miRNA:   3'- gcCAGUCGCGGCGU---CGUaa--------GCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 6367 0.72 0.276159
Target:  5'- gCGGaCGGUGCCGgAGCGUugUCGGC-CGc -3'
miRNA:   3'- -GCCaGUCGCGGCgUCGUA--AGCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 14045 0.72 0.276159
Target:  5'- uCGGgcgCgGGCGCCGcCGGCGU-CGGUGCGg -3'
miRNA:   3'- -GCCa--G-UCGCGGC-GUCGUAaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 20716 0.72 0.267453
Target:  5'- cCGGUCAGgucgaugaugaagcUGCCGCGGCGcgCGGUGCc -3'
miRNA:   3'- -GCCAGUC--------------GCGGCGUCGUaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 13791 0.72 0.262857
Target:  5'- uCGGUgGGCGCCggcGCGGCuucaUCGGCGgGa -3'
miRNA:   3'- -GCCAgUCGCGG---CGUCGua--AGCCGUgC- -5'
24108 3' -58.5 NC_005262.1 + 5176 0.72 0.262857
Target:  5'- aCGGcCGGCGUCGCGggcgcgggcGCGgcCGGCGCGa -3'
miRNA:   3'- -GCCaGUCGCGGCGU---------CGUaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 58808 0.73 0.240232
Target:  5'- aCGuGaUCGGCGCCGUgaaGGCAUggcugcugcggcgcuUCGGCACGc -3'
miRNA:   3'- -GC-C-AGUCGCGGCG---UCGUA---------------AGCCGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.