miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 17338 0.71 0.304367
Target:  5'- uGGcCGGCGCgGCAuucggguccggcGCGggCGGCGCGg -3'
miRNA:   3'- gCCaGUCGCGgCGU------------CGUaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 17545 0.73 0.23782
Target:  5'- gCGGUCGcGCGCgagGCGGCAgccgcggCGGCGCGc -3'
miRNA:   3'- -GCCAGU-CGCGg--CGUCGUaa-----GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 18720 0.67 0.537624
Target:  5'- gGcGUCaaGGCGCUccuCAGC-UUCGGCGCGg -3'
miRNA:   3'- gC-CAG--UCGCGGc--GUCGuAAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 19528 0.67 0.517084
Target:  5'- gCGGUCAGaaaauCGCgCGuCAGCcagUGGCGCGa -3'
miRNA:   3'- -GCCAGUC-----GCG-GC-GUCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 19623 0.69 0.393042
Target:  5'- gCGGUCGGCGUC-CAGCc--CGGCAa- -3'
miRNA:   3'- -GCCAGUCGCGGcGUCGuaaGCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 20094 0.66 0.558438
Target:  5'- uCGGUgAGCGCguCGCcGCGcgaaUUCGGCcCGg -3'
miRNA:   3'- -GCCAgUCGCG--GCGuCGU----AAGCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 20716 0.72 0.267453
Target:  5'- cCGGUCAGgucgaugaugaagcUGCCGCGGCGcgCGGUGCc -3'
miRNA:   3'- -GCCAGUC--------------GCGGCGUCGUaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 21686 0.68 0.447988
Target:  5'- gCGG-CGGCGCCGCGcuGCuguacgCGgGCACGc -3'
miRNA:   3'- -GCCaGUCGCGGCGU--CGuaa---GC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 21768 0.68 0.46723
Target:  5'- aCGcGUCAaCGUCGCcaAGCAUcUCGGCAUGc -3'
miRNA:   3'- -GC-CAGUcGCGGCG--UCGUA-AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 22345 0.71 0.309524
Target:  5'- gCGGUCAgcguaacgguagccGCGCCGCccguGUuagUCGGCGCa -3'
miRNA:   3'- -GCCAGU--------------CGCGGCGu---CGua-AGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 22572 0.67 0.548
Target:  5'- cCGGccUUAGCgGCCGCAuGCg--CGGCGCu -3'
miRNA:   3'- -GCC--AGUCG-CGGCGU-CGuaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 23084 0.71 0.31928
Target:  5'- gGcGUCAGCGCCGCcGUAUUaUGGCcguGCGa -3'
miRNA:   3'- gC-CAGUCGCGGCGuCGUAA-GCCG---UGC- -5'
24108 3' -58.5 NC_005262.1 + 23228 0.67 0.517084
Target:  5'- aCGGUCgcGGCaccGCCGguGUugccCGGCGCGu -3'
miRNA:   3'- -GCCAG--UCG---CGGCguCGuaa-GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 23902 0.69 0.393042
Target:  5'- cCGuGUCAGgaucgaCGCCGaGGCGUUCGGCAa- -3'
miRNA:   3'- -GC-CAGUC------GCGGCgUCGUAAGCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 24087 0.67 0.496865
Target:  5'- aCGaUCAGCGUCGCGGUcgaugCGGCggACGg -3'
miRNA:   3'- -GCcAGUCGCGGCGUCGuaa--GCCG--UGC- -5'
24108 3' -58.5 NC_005262.1 + 24205 0.66 0.590056
Target:  5'- aGG-CGGCaGCCGCGacGCugcgcCGGCACGc -3'
miRNA:   3'- gCCaGUCG-CGGCGU--CGuaa--GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 24327 0.77 0.13367
Target:  5'- uGGUCGGCGCgaucgacaUGCGGCucugcgUCGGCGCGc -3'
miRNA:   3'- gCCAGUCGCG--------GCGUCGua----AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 24978 0.68 0.486889
Target:  5'- aGGcCGGCuugGUCgagGCGGCAUUCGaGCGCGg -3'
miRNA:   3'- gCCaGUCG---CGG---CGUCGUAAGC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 28412 0.69 0.428266
Target:  5'- gCGGUauugAGCGCCGCgugcgccAGCAUauuuccgccggUCGGUGCGu -3'
miRNA:   3'- -GCCAg---UCGCGGCG-------UCGUA-----------AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 30025 0.71 0.326939
Target:  5'- aGGUCGGUa--GCGGCGaUCGGCAUGg -3'
miRNA:   3'- gCCAGUCGcggCGUCGUaAGCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.