miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 30500 0.7 0.342665
Target:  5'- aCGGcuUCGGCGCC-CGGCGUgcgcgcgaugCGGUACGc -3'
miRNA:   3'- -GCC--AGUCGCGGcGUCGUAa---------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 32133 0.75 0.17914
Target:  5'- aCGGaCAuGCGCacCGCAGCGggCGGCACGu -3'
miRNA:   3'- -GCCaGU-CGCG--GCGUCGUaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 32175 0.68 0.486889
Target:  5'- aGGUCGGCuuGCCGC-GCAggu-GCACGg -3'
miRNA:   3'- gCCAGUCG--CGGCGuCGUaagcCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 32743 0.69 0.419972
Target:  5'- gCGcGUCGGCGUCGgucagcacCAGCAggCGGUACu -3'
miRNA:   3'- -GC-CAGUCGCGGC--------GUCGUaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 33320 0.66 0.588996
Target:  5'- aGGauuUCGGCGCCGUcgauguuGGCGUUcucCGGCuucGCGg -3'
miRNA:   3'- gCC---AGUCGCGGCG-------UCGUAA---GCCG---UGC- -5'
24108 3' -58.5 NC_005262.1 + 34006 0.68 0.457555
Target:  5'- aGGUUgcuggGGUGCCGCGcCGUcCGGCACu -3'
miRNA:   3'- gCCAG-----UCGCGGCGUcGUAaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 35231 0.73 0.23782
Target:  5'- aGGUCGGCGgCGCgaucGGCAg-CGGCugGg -3'
miRNA:   3'- gCCAGUCGCgGCG----UCGUaaGCCGugC- -5'
24108 3' -58.5 NC_005262.1 + 35656 0.68 0.465286
Target:  5'- gGGcuacUCGGUGCCGCAGCucgugcucacgUCgagcgGGCACGg -3'
miRNA:   3'- gCC----AGUCGCGGCGUCGua---------AG-----CCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 35840 0.68 0.438533
Target:  5'- gGcGUCGGCGCCGCGaccGCccagauGUUUGuGCGCGg -3'
miRNA:   3'- gC-CAGUCGCGGCGU---CG------UAAGC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 36337 0.7 0.36726
Target:  5'- cCGGUgCGuGCGCCGUcaGGCuugaucgaUCGGCACGu -3'
miRNA:   3'- -GCCA-GU-CGCGGCG--UCGua------AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 36528 0.69 0.429193
Target:  5'- aCGGUCGGCGCgGCgacuGGgAUUaucgGGCGCa -3'
miRNA:   3'- -GCCAGUCGCGgCG----UCgUAAg---CCGUGc -5'
24108 3' -58.5 NC_005262.1 + 36730 0.66 0.600673
Target:  5'- gGGcUGGCGCCGCGGgcgcaGUUCuGCGCa -3'
miRNA:   3'- gCCaGUCGCGGCGUCg----UAAGcCGUGc -5'
24108 3' -58.5 NC_005262.1 + 39590 0.67 0.517084
Target:  5'- cCGGcgCAGCGUCGCGGCugccgccUCGG-GCGu -3'
miRNA:   3'- -GCCa-GUCGCGGCGUCGua-----AGCCgUGC- -5'
24108 3' -58.5 NC_005262.1 + 40295 0.66 0.568932
Target:  5'- aGGgaaCGGgGCCGCAGCAguucaacccCGGCGa- -3'
miRNA:   3'- gCCa--GUCgCGGCGUCGUaa-------GCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 40600 0.68 0.486889
Target:  5'- aCGGUggcgCAGaUGCCGCAGCAUaaucaCGGCGu- -3'
miRNA:   3'- -GCCA----GUC-GCGGCGUCGUAa----GCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 40994 0.66 0.600673
Target:  5'- gCGG-CGGCGCuCGCuGCugaUGGCACc -3'
miRNA:   3'- -GCCaGUCGCG-GCGuCGuaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 41218 0.67 0.537624
Target:  5'- ---gCAGCGCCGC-GCAUgCGGC-CGc -3'
miRNA:   3'- gccaGUCGCGGCGuCGUAaGCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 41264 0.67 0.506931
Target:  5'- aCGG-CGGCGaucaCGCAG-AUUCGGcCGCGc -3'
miRNA:   3'- -GCCaGUCGCg---GCGUCgUAAGCC-GUGC- -5'
24108 3' -58.5 NC_005262.1 + 41664 0.67 0.517084
Target:  5'- cCGG-CGGCGCCGUcaucgccgccGGCAccggcaUCGGCAUc -3'
miRNA:   3'- -GCCaGUCGCGGCG----------UCGUa-----AGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 42240 0.7 0.334734
Target:  5'- gCGGUUccgaugccgAGCGCCGCgcucacugcGGCGacgagCGGCACGg -3'
miRNA:   3'- -GCCAG---------UCGCGGCG---------UCGUaa---GCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.