miRNA display CGI


Results 81 - 100 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 43590 0.68 0.486889
Target:  5'- aGGUCAGCGCgaaCGCAGauaUCGcGCAgGu -3'
miRNA:   3'- gCCAGUCGCG---GCGUCguaAGC-CGUgC- -5'
24108 3' -58.5 NC_005262.1 + 43854 0.69 0.401894
Target:  5'- gCGGU--GCGCCgGCAGgAccUCGGCGCGa -3'
miRNA:   3'- -GCCAguCGCGG-CGUCgUa-AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 45709 0.67 0.548
Target:  5'- cCGG-CAGCcgGCCGUgaucgAGCAgUUCGGCAUc -3'
miRNA:   3'- -GCCaGUCG--CGGCG-----UCGU-AAGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 46115 0.66 0.579474
Target:  5'- aCGGcCGGCuucuucGCCGCuuccAGC--UCGGCGCGc -3'
miRNA:   3'- -GCCaGUCG------CGGCG----UCGuaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 46379 0.71 0.297113
Target:  5'- aGGUCguccagcguGGCGCC-CAGCGUcUCGGCAUu -3'
miRNA:   3'- gCCAG---------UCGCGGcGUCGUA-AGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 46697 0.71 0.289994
Target:  5'- -aGUCAGCGCCGCGcgcGCAguggacaagcCGGCGCa -3'
miRNA:   3'- gcCAGUCGCGGCGU---CGUaa--------GCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 46907 0.66 0.568932
Target:  5'- gCGGUgCGGUGUggUGCGGCc--CGGCGCGc -3'
miRNA:   3'- -GCCA-GUCGCG--GCGUCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 48303 0.66 0.600673
Target:  5'- cCGGUgAGCgaGCCGCcGCGcUCGGUguaaGCGc -3'
miRNA:   3'- -GCCAgUCG--CGGCGuCGUaAGCCG----UGC- -5'
24108 3' -58.5 NC_005262.1 + 48765 0.67 0.496865
Target:  5'- aGGUCGGCGCgaacaugGCAGCGcaggaCGuGCGCGa -3'
miRNA:   3'- gCCAGUCGCGg------CGUCGUaa---GC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 48956 0.68 0.466257
Target:  5'- uGGUCGccagcauGaCGCCGCAgauGCAggCGGCGCu -3'
miRNA:   3'- gCCAGU-------C-GCGGCGU---CGUaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 49153 0.7 0.345874
Target:  5'- aCGGUgGGCgugcaggccgcaucgGCCGCAGCgg-CGcGCACGg -3'
miRNA:   3'- -GCCAgUCG---------------CGGCGUCGuaaGC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 50406 0.68 0.454673
Target:  5'- gCGGcgaUCAGCGCCGCGGagcgcgagggccgCGuGCACGu -3'
miRNA:   3'- -GCC---AGUCGCGGCGUCguaa---------GC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 50740 0.66 0.600673
Target:  5'- cCGGUCaAGCcacaaucgGCCGCAGCucgaCGcGCACc -3'
miRNA:   3'- -GCCAG-UCG--------CGGCGUCGuaa-GC-CGUGc -5'
24108 3' -58.5 NC_005262.1 + 50846 0.66 0.588996
Target:  5'- cCGGUCGGCgauGCCGUcGCGcacgcccUUCaGCGCGc -3'
miRNA:   3'- -GCCAGUCG---CGGCGuCGU-------AAGcCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 50940 0.67 0.517084
Target:  5'- aCGG-CAGCGCga-AGC--UCGGCACGa -3'
miRNA:   3'- -GCCaGUCGCGgcgUCGuaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 52140 0.66 0.590056
Target:  5'- cCGGcCAGCG-UGCAGCGcgacgcCGGCGCc -3'
miRNA:   3'- -GCCaGUCGCgGCGUCGUaa----GCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 52388 0.68 0.438533
Target:  5'- gCGGccCGGCGCggCGCGGC-UUCGGCGUGg -3'
miRNA:   3'- -GCCa-GUCGCG--GCGUCGuAAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 53004 0.66 0.575252
Target:  5'- gCGG-CAGCuCgCGCAGCAguaccgcgcgccCGGCGCGg -3'
miRNA:   3'- -GCCaGUCGcG-GCGUCGUaa----------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 53455 0.67 0.54696
Target:  5'- gCGGcgcCGGCGUCGaggacaaCGGCGUgaaguggcUCGGCACGg -3'
miRNA:   3'- -GCCa--GUCGCGGC-------GUCGUA--------AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 54296 0.71 0.307306
Target:  5'- gCGGUCGG-GCCGCAaaucgcaccagugguGCGgaaUCGGCACc -3'
miRNA:   3'- -GCCAGUCgCGGCGU---------------CGUa--AGCCGUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.