Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24108 | 3' | -58.5 | NC_005262.1 | + | 50740 | 0.66 | 0.600673 |
Target: 5'- cCGGUCaAGCcacaaucgGCCGCAGCucgaCGcGCACc -3' miRNA: 3'- -GCCAG-UCG--------CGGCGUCGuaa-GC-CGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 50406 | 0.68 | 0.454673 |
Target: 5'- gCGGcgaUCAGCGCCGCGGagcgcgagggccgCGuGCACGu -3' miRNA: 3'- -GCC---AGUCGCGGCGUCguaa---------GC-CGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 49153 | 0.7 | 0.345874 |
Target: 5'- aCGGUgGGCgugcaggccgcaucgGCCGCAGCgg-CGcGCACGg -3' miRNA: 3'- -GCCAgUCG---------------CGGCGUCGuaaGC-CGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 48956 | 0.68 | 0.466257 |
Target: 5'- uGGUCGccagcauGaCGCCGCAgauGCAggCGGCGCu -3' miRNA: 3'- gCCAGU-------C-GCGGCGU---CGUaaGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 48765 | 0.67 | 0.496865 |
Target: 5'- aGGUCGGCGCgaacaugGCAGCGcaggaCGuGCGCGa -3' miRNA: 3'- gCCAGUCGCGg------CGUCGUaa---GC-CGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 48303 | 0.66 | 0.600673 |
Target: 5'- cCGGUgAGCgaGCCGCcGCGcUCGGUguaaGCGc -3' miRNA: 3'- -GCCAgUCG--CGGCGuCGUaAGCCG----UGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 46907 | 0.66 | 0.568932 |
Target: 5'- gCGGUgCGGUGUggUGCGGCc--CGGCGCGc -3' miRNA: 3'- -GCCA-GUCGCG--GCGUCGuaaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 46697 | 0.71 | 0.289994 |
Target: 5'- -aGUCAGCGCCGCGcgcGCAguggacaagcCGGCGCa -3' miRNA: 3'- gcCAGUCGCGGCGU---CGUaa--------GCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 46379 | 0.71 | 0.297113 |
Target: 5'- aGGUCguccagcguGGCGCC-CAGCGUcUCGGCAUu -3' miRNA: 3'- gCCAG---------UCGCGGcGUCGUA-AGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 46115 | 0.66 | 0.579474 |
Target: 5'- aCGGcCGGCuucuucGCCGCuuccAGC--UCGGCGCGc -3' miRNA: 3'- -GCCaGUCG------CGGCG----UCGuaAGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 45709 | 0.67 | 0.548 |
Target: 5'- cCGG-CAGCcgGCCGUgaucgAGCAgUUCGGCAUc -3' miRNA: 3'- -GCCaGUCG--CGGCG-----UCGU-AAGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 43854 | 0.69 | 0.401894 |
Target: 5'- gCGGU--GCGCCgGCAGgAccUCGGCGCGa -3' miRNA: 3'- -GCCAguCGCGG-CGUCgUa-AGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 43590 | 0.68 | 0.486889 |
Target: 5'- aGGUCAGCGCgaaCGCAGauaUCGcGCAgGu -3' miRNA: 3'- gCCAGUCGCG---GCGUCguaAGC-CGUgC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 42240 | 0.7 | 0.334734 |
Target: 5'- gCGGUUccgaugccgAGCGCCGCgcucacugcGGCGacgagCGGCACGg -3' miRNA: 3'- -GCCAG---------UCGCGGCG---------UCGUaa---GCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 41664 | 0.67 | 0.517084 |
Target: 5'- cCGG-CGGCGCCGUcaucgccgccGGCAccggcaUCGGCAUc -3' miRNA: 3'- -GCCaGUCGCGGCG----------UCGUa-----AGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 41264 | 0.67 | 0.506931 |
Target: 5'- aCGG-CGGCGaucaCGCAG-AUUCGGcCGCGc -3' miRNA: 3'- -GCCaGUCGCg---GCGUCgUAAGCC-GUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 41218 | 0.67 | 0.537624 |
Target: 5'- ---gCAGCGCCGC-GCAUgCGGC-CGc -3' miRNA: 3'- gccaGUCGCGGCGuCGUAaGCCGuGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 40994 | 0.66 | 0.600673 |
Target: 5'- gCGG-CGGCGCuCGCuGCugaUGGCACc -3' miRNA: 3'- -GCCaGUCGCG-GCGuCGuaaGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 40600 | 0.68 | 0.486889 |
Target: 5'- aCGGUggcgCAGaUGCCGCAGCAUaaucaCGGCGu- -3' miRNA: 3'- -GCCA----GUC-GCGGCGUCGUAa----GCCGUgc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 40295 | 0.66 | 0.568932 |
Target: 5'- aGGgaaCGGgGCCGCAGCAguucaacccCGGCGa- -3' miRNA: 3'- gCCa--GUCgCGGCGUCGUaa-------GCCGUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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