miRNA display CGI


Results 61 - 80 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 23228 0.67 0.517084
Target:  5'- aCGGUCgcGGCaccGCCGguGUugccCGGCGCGu -3'
miRNA:   3'- -GCCAG--UCG---CGGCguCGuaa-GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 23084 0.71 0.31928
Target:  5'- gGcGUCAGCGCCGCcGUAUUaUGGCcguGCGa -3'
miRNA:   3'- gC-CAGUCGCGGCGuCGUAA-GCCG---UGC- -5'
24108 3' -58.5 NC_005262.1 + 22572 0.67 0.548
Target:  5'- cCGGccUUAGCgGCCGCAuGCg--CGGCGCu -3'
miRNA:   3'- -GCC--AGUCG-CGGCGU-CGuaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 22345 0.71 0.309524
Target:  5'- gCGGUCAgcguaacgguagccGCGCCGCccguGUuagUCGGCGCa -3'
miRNA:   3'- -GCCAGU--------------CGCGGCGu---CGua-AGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 21768 0.68 0.46723
Target:  5'- aCGcGUCAaCGUCGCcaAGCAUcUCGGCAUGc -3'
miRNA:   3'- -GC-CAGUcGCGGCG--UCGUA-AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 21686 0.68 0.447988
Target:  5'- gCGG-CGGCGCCGCGcuGCuguacgCGgGCACGc -3'
miRNA:   3'- -GCCaGUCGCGGCGU--CGuaa---GC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 20716 0.72 0.267453
Target:  5'- cCGGUCAGgucgaugaugaagcUGCCGCGGCGcgCGGUGCc -3'
miRNA:   3'- -GCCAGUC--------------GCGGCGUCGUaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 20094 0.66 0.558438
Target:  5'- uCGGUgAGCGCguCGCcGCGcgaaUUCGGCcCGg -3'
miRNA:   3'- -GCCAgUCGCG--GCGuCGU----AAGCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 19623 0.69 0.393042
Target:  5'- gCGGUCGGCGUC-CAGCc--CGGCAa- -3'
miRNA:   3'- -GCCAGUCGCGGcGUCGuaaGCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 19528 0.67 0.517084
Target:  5'- gCGGUCAGaaaauCGCgCGuCAGCcagUGGCGCGa -3'
miRNA:   3'- -GCCAGUC-----GCG-GC-GUCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 18720 0.67 0.537624
Target:  5'- gGcGUCaaGGCGCUccuCAGC-UUCGGCGCGg -3'
miRNA:   3'- gC-CAG--UCGCGGc--GUCGuAAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 17545 0.73 0.23782
Target:  5'- gCGGUCGcGCGCgagGCGGCAgccgcggCGGCGCGc -3'
miRNA:   3'- -GCCAGU-CGCGg--CGUCGUaa-----GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 17338 0.71 0.304367
Target:  5'- uGGcCGGCGCgGCAuucggguccggcGCGggCGGCGCGg -3'
miRNA:   3'- gCCaGUCGCGgCGU------------CGUaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 17262 0.69 0.401894
Target:  5'- gCGGcCGGCGCCGCgcugGGCug-CuGCGCGg -3'
miRNA:   3'- -GCCaGUCGCGGCG----UCGuaaGcCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 16352 0.79 0.091182
Target:  5'- uCGGcgcgcugaUCGGCGCCGCcGCGUUCGGCAa- -3'
miRNA:   3'- -GCC--------AGUCGCGGCGuCGUAAGCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 16083 0.66 0.600673
Target:  5'- aGG-CGGCgaGCCGCcGCc--CGGCGCGg -3'
miRNA:   3'- gCCaGUCG--CGGCGuCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 16051 0.71 0.326939
Target:  5'- gGGUU--CGCCGCGGCcggCGGCGCa -3'
miRNA:   3'- gCCAGucGCGGCGUCGuaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 15714 0.7 0.334734
Target:  5'- gCGcGUCGGCGCCggGCGGCucgucgCGGCAgGu -3'
miRNA:   3'- -GC-CAGUCGCGG--CGUCGuaa---GCCGUgC- -5'
24108 3' -58.5 NC_005262.1 + 15176 0.69 0.401894
Target:  5'- aCGGcacgCAGCGCuaCGCGGCGUUCugcaaGGCgACGa -3'
miRNA:   3'- -GCCa---GUCGCG--GCGUCGUAAG-----CCG-UGC- -5'
24108 3' -58.5 NC_005262.1 + 15145 0.66 0.558438
Target:  5'- gCGGcCGGCGUCGag----UCGGCGCGg -3'
miRNA:   3'- -GCCaGUCGCGGCgucguaAGCCGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.