miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 15095 0.71 0.31928
Target:  5'- aCGcGUCuuucuGCGgCGCGGCGUcCGGCugGa -3'
miRNA:   3'- -GC-CAGu----CGCgGCGUCGUAaGCCGugC- -5'
24108 3' -58.5 NC_005262.1 + 14536 0.66 0.590056
Target:  5'- uGG-CAGUGCCGU-GCAUgcgcuggaUCGGCAgGc -3'
miRNA:   3'- gCCaGUCGCGGCGuCGUA--------AGCCGUgC- -5'
24108 3' -58.5 NC_005262.1 + 14045 0.72 0.276159
Target:  5'- uCGGgcgCgGGCGCCGcCGGCGU-CGGUGCGg -3'
miRNA:   3'- -GCCa--G-UCGCGGC-GUCGUAaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 14003 0.69 0.384318
Target:  5'- cCGGaCGGUGCaGgGGCGUcCGGCGCGg -3'
miRNA:   3'- -GCCaGUCGCGgCgUCGUAaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 13791 0.72 0.262857
Target:  5'- uCGGUgGGCGCCggcGCGGCuucaUCGGCGgGa -3'
miRNA:   3'- -GCCAgUCGCGG---CGUCGua--AGCCGUgC- -5'
24108 3' -58.5 NC_005262.1 + 13722 0.67 0.517084
Target:  5'- uCGGUCGGCGCaGCGGCcUUCGuCucCGg -3'
miRNA:   3'- -GCCAGUCGCGgCGUCGuAAGCcGu-GC- -5'
24108 3' -58.5 NC_005262.1 + 13677 0.68 0.489872
Target:  5'- uCGGUCAGCGagCGCucGGCcggcuucuguucgcgCGGCGCGg -3'
miRNA:   3'- -GCCAGUCGCg-GCG--UCGuaa------------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 13430 0.68 0.477009
Target:  5'- aCGGUCGacgaauGCGCCGCucGCggUCGuCGCGg -3'
miRNA:   3'- -GCCAGU------CGCGGCGu-CGuaAGCcGUGC- -5'
24108 3' -58.5 NC_005262.1 + 13142 0.67 0.517084
Target:  5'- aGGUCcgccGCGCgCGCuGCg--CGGCACa -3'
miRNA:   3'- gCCAGu---CGCG-GCGuCGuaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 12805 0.67 0.496865
Target:  5'- uGGgCGGCG-CGCAGC---CGGCGCGu -3'
miRNA:   3'- gCCaGUCGCgGCGUCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 12502 0.66 0.590056
Target:  5'- uGGUCgAGCGgcaugCGCAGCAgccggCGGC-CGg -3'
miRNA:   3'- gCCAG-UCGCg----GCGUCGUaa---GCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 12428 0.73 0.226067
Target:  5'- uGGcCGGCGUCGCGGa---CGGCGCGg -3'
miRNA:   3'- gCCaGUCGCGGCGUCguaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 12325 0.7 0.342665
Target:  5'- gCGGcUC-GUGCCGCAGCGcgCGGCGg- -3'
miRNA:   3'- -GCC-AGuCGCGGCGUCGUaaGCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 11902 0.8 0.081616
Target:  5'- gCGGUCGGUGCCGUucGGCGgcgUCGGCuCGg -3'
miRNA:   3'- -GCCAGUCGCGGCG--UCGUa--AGCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 10559 0.69 0.423646
Target:  5'- cCGGcCGcgcGCaGCCGCAGCGUaccgcggagcagcgCGGCGCGa -3'
miRNA:   3'- -GCCaGU---CG-CGGCGUCGUAa-------------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 10460 0.69 0.384318
Target:  5'- gCGGUCGGCGagGUAGCgg-CGcGCGCGg -3'
miRNA:   3'- -GCCAGUCGCggCGUCGuaaGC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 9363 0.75 0.169959
Target:  5'- cCGGUCGGCGCgCGCGGCGgcCuGCGCc -3'
miRNA:   3'- -GCCAGUCGCG-GCGUCGUaaGcCGUGc -5'
24108 3' -58.5 NC_005262.1 + 9301 0.69 0.429193
Target:  5'- uCGGUCGG-GCCcaGCGGC-UUCGGCuGCa -3'
miRNA:   3'- -GCCAGUCgCGG--CGUCGuAAGCCG-UGc -5'
24108 3' -58.5 NC_005262.1 + 8956 0.69 0.429193
Target:  5'- cCGGUCGGCG-CGCuGCGUgUCGGUcCa -3'
miRNA:   3'- -GCCAGUCGCgGCGuCGUA-AGCCGuGc -5'
24108 3' -58.5 NC_005262.1 + 8196 0.74 0.204038
Target:  5'- cCGGaaGGCGCCGCAGCGaugaUCcGCGCGg -3'
miRNA:   3'- -GCCagUCGCGGCGUCGUa---AGcCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.