miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 55966 0.71 0.297113
Target:  5'- uGGUCA-CGCCGgAGcCGUUCGGCuACa -3'
miRNA:   3'- gCCAGUcGCGGCgUC-GUAAGCCG-UGc -5'
24108 3' -58.5 NC_005262.1 + 42240 0.7 0.334734
Target:  5'- gCGGUUccgaugccgAGCGCCGCgcucacugcGGCGacgagCGGCACGg -3'
miRNA:   3'- -GCCAG---------UCGCGGCG---------UCGUaa---GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 35840 0.68 0.438533
Target:  5'- gGcGUCGGCGCCGCGaccGCccagauGUUUGuGCGCGg -3'
miRNA:   3'- gC-CAGUCGCGGCGU---CG------UAAGC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 36528 0.69 0.429193
Target:  5'- aCGGUCGGCGCgGCgacuGGgAUUaucgGGCGCa -3'
miRNA:   3'- -GCCAGUCGCGgCG----UCgUAAg---CCGUGc -5'
24108 3' -58.5 NC_005262.1 + 10559 0.69 0.423646
Target:  5'- cCGGcCGcgcGCaGCCGCAGCGUaccgcggagcagcgCGGCGCGa -3'
miRNA:   3'- -GCCaGU---CG-CGGCGUCGUAa-------------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 15176 0.69 0.401894
Target:  5'- aCGGcacgCAGCGCuaCGCGGCGUUCugcaaGGCgACGa -3'
miRNA:   3'- -GCCa---GUCGCG--GCGUCGUAAG-----CCG-UGC- -5'
24108 3' -58.5 NC_005262.1 + 43854 0.69 0.401894
Target:  5'- gCGGU--GCGCCgGCAGgAccUCGGCGCGa -3'
miRNA:   3'- -GCCAguCGCGG-CGUCgUa-AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 23902 0.69 0.393042
Target:  5'- cCGuGUCAGgaucgaCGCCGaGGCGUUCGGCAa- -3'
miRNA:   3'- -GC-CAGUC------GCGGCgUCGUAAGCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 19623 0.69 0.393042
Target:  5'- gCGGUCGGCGUC-CAGCc--CGGCAa- -3'
miRNA:   3'- -GCCAGUCGCGGcGUCGuaaGCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 58947 0.7 0.365583
Target:  5'- uCGGUCGGCG-CGCAGCAgucgaaccagcCGGC-CGc -3'
miRNA:   3'- -GCCAGUCGCgGCGUCGUaa---------GCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 5062 0.7 0.350729
Target:  5'- gCGGgcaGGC-CCGCGGCgg-CGGCGCGu -3'
miRNA:   3'- -GCCag-UCGcGGCGUCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 49153 0.7 0.345874
Target:  5'- aCGGUgGGCgugcaggccgcaucgGCCGCAGCgg-CGcGCACGg -3'
miRNA:   3'- -GCCAgUCG---------------CGGCGUCGuaaGC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 12325 0.7 0.342665
Target:  5'- gCGGcUC-GUGCCGCAGCGcgCGGCGg- -3'
miRNA:   3'- -GCC-AGuCGCGGCGUCGUaaGCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 50846 0.66 0.588996
Target:  5'- cCGGUCGGCgauGCCGUcGCGcacgcccUUCaGCGCGc -3'
miRNA:   3'- -GCCAGUCG---CGGCGuCGU-------AAGcCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 12502 0.66 0.590056
Target:  5'- uGGUCgAGCGgcaugCGCAGCAgccggCGGC-CGg -3'
miRNA:   3'- gCCAG-UCGCg----GCGUCGUaa---GCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 52140 0.66 0.590056
Target:  5'- cCGGcCAGCG-UGCAGCGcgacgcCGGCGCc -3'
miRNA:   3'- -GCCaGUCGCgGCGUCGUaa----GCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 1999 0.66 0.59961
Target:  5'- aGG-CAuGCGCCGCGcaggcgaaaacgcGCuggucggUCGGCGCGu -3'
miRNA:   3'- gCCaGU-CGCGGCGU-------------CGua-----AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 16083 0.66 0.600673
Target:  5'- aGG-CGGCgaGCCGCcGCc--CGGCGCGg -3'
miRNA:   3'- gCCaGUCG--CGGCGuCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 48303 0.66 0.600673
Target:  5'- cCGGUgAGCgaGCCGCcGCGcUCGGUguaaGCGc -3'
miRNA:   3'- -GCCAgUCG--CGGCGuCGUaAGCCG----UGC- -5'
24108 3' -58.5 NC_005262.1 + 11902 0.8 0.081616
Target:  5'- gCGGUCGGUGCCGUucGGCGgcgUCGGCuCGg -3'
miRNA:   3'- -GCCAGUCGCGGCG--UCGUa--AGCCGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.