miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 59210 0.68 0.487882
Target:  5'- gCGGgcgcucacgcccgagCAGCGCCGCcGC---UGGCGCGa -3'
miRNA:   3'- -GCCa--------------GUCGCGGCGuCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 32175 0.68 0.486889
Target:  5'- aGGUCGGCuuGCCGC-GCAggu-GCACGg -3'
miRNA:   3'- gCCAGUCG--CGGCGuCGUaagcCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 13430 0.68 0.477009
Target:  5'- aCGGUCGacgaauGCGCCGCucGCggUCGuCGCGg -3'
miRNA:   3'- -GCCAGU------CGCGGCGu-CGuaAGCcGUGC- -5'
24108 3' -58.5 NC_005262.1 + 56600 0.68 0.473085
Target:  5'- cCGGUCuuacaaugcaaucGCGCCGCAauuacGCGguagCGGCAUGc -3'
miRNA:   3'- -GCCAGu------------CGCGGCGU-----CGUaa--GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 61785 0.68 0.457555
Target:  5'- aCGaagCAGCGCCGUGGCGUggagcaugCGaGCACa -3'
miRNA:   3'- -GCca-GUCGCGGCGUCGUAa-------GC-CGUGc -5'
24108 3' -58.5 NC_005262.1 + 34006 0.68 0.457555
Target:  5'- aGGUUgcuggGGUGCCGCGcCGUcCGGCACu -3'
miRNA:   3'- gCCAG-----UCGCGGCGUcGUAaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 5084 0.67 0.527317
Target:  5'- gCGGUCAGCgccucgggcauGCCGcCAGCuugUUGcGCGCu -3'
miRNA:   3'- -GCCAGUCG-----------CGGC-GUCGua-AGC-CGUGc -5'
24108 3' -58.5 NC_005262.1 + 2776 0.67 0.527317
Target:  5'- gCGGUUAGCagacgucucgGCgaGCGGCuugaugacggUCGGCACGg -3'
miRNA:   3'- -GCCAGUCG----------CGg-CGUCGua--------AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 48303 0.66 0.600673
Target:  5'- cCGGUgAGCgaGCCGCcGCGcUCGGUguaaGCGc -3'
miRNA:   3'- -GCCAgUCG--CGGCGuCGUaAGCCG----UGC- -5'
24108 3' -58.5 NC_005262.1 + 16083 0.66 0.600673
Target:  5'- aGG-CGGCgaGCCGCcGCc--CGGCGCGg -3'
miRNA:   3'- gCCaGUCG--CGGCGuCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 1999 0.66 0.59961
Target:  5'- aGG-CAuGCGCCGCGcaggcgaaaacgcGCuggucggUCGGCGCGu -3'
miRNA:   3'- gCCaGU-CGCGGCGU-------------CGua-----AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 52140 0.66 0.590056
Target:  5'- cCGGcCAGCG-UGCAGCGcgacgcCGGCGCc -3'
miRNA:   3'- -GCCaGUCGCgGCGUCGUaa----GCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 12502 0.66 0.590056
Target:  5'- uGGUCgAGCGgcaugCGCAGCAgccggCGGC-CGg -3'
miRNA:   3'- gCCAG-UCGCg----GCGUCGUaa---GCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 50846 0.66 0.588996
Target:  5'- cCGGUCGGCgauGCCGUcGCGcacgcccUUCaGCGCGc -3'
miRNA:   3'- -GCCAGUCG---CGGCGuCGU-------AAGcCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 33320 0.66 0.588996
Target:  5'- aGGauuUCGGCGCCGUcgauguuGGCGUUcucCGGCuucGCGg -3'
miRNA:   3'- gCC---AGUCGCGGCG-------UCGUAA---GCCG---UGC- -5'
24108 3' -58.5 NC_005262.1 + 46115 0.66 0.579474
Target:  5'- aCGGcCGGCuucuucGCCGCuuccAGC--UCGGCGCGc -3'
miRNA:   3'- -GCCaGUCG------CGGCG----UCGuaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 53004 0.66 0.575252
Target:  5'- gCGG-CAGCuCgCGCAGCAguaccgcgcgccCGGCGCGg -3'
miRNA:   3'- -GCCaGUCGcG-GCGUCGUaa----------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 46907 0.66 0.568932
Target:  5'- gCGGUgCGGUGUggUGCGGCc--CGGCGCGc -3'
miRNA:   3'- -GCCA-GUCGCG--GCGUCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 20094 0.66 0.558438
Target:  5'- uCGGUgAGCGCguCGCcGCGcgaaUUCGGCcCGg -3'
miRNA:   3'- -GCCAgUCGCG--GCGuCGU----AAGCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 41218 0.67 0.537624
Target:  5'- ---gCAGCGCCGC-GCAUgCGGC-CGc -3'
miRNA:   3'- gccaGUCGCGGCGuCGUAaGCCGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.