miRNA display CGI


Results 101 - 113 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 34006 0.68 0.457555
Target:  5'- aGGUUgcuggGGUGCCGCGcCGUcCGGCACu -3'
miRNA:   3'- gCCAG-----UCGCGGCGUcGUAaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 61785 0.68 0.457555
Target:  5'- aCGaagCAGCGCCGUGGCGUggagcaugCGaGCACa -3'
miRNA:   3'- -GCca-GUCGCGGCGUCGUAa-------GC-CGUGc -5'
24108 3' -58.5 NC_005262.1 + 56600 0.68 0.473085
Target:  5'- cCGGUCuuacaaugcaaucGCGCCGCAauuacGCGguagCGGCAUGc -3'
miRNA:   3'- -GCCAGu------------CGCGGCGU-----CGUaa--GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 13430 0.68 0.477009
Target:  5'- aCGGUCGacgaauGCGCCGCucGCggUCGuCGCGg -3'
miRNA:   3'- -GCCAGU------CGCGGCGu-CGuaAGCcGUGC- -5'
24108 3' -58.5 NC_005262.1 + 32175 0.68 0.486889
Target:  5'- aGGUCGGCuuGCCGC-GCAggu-GCACGg -3'
miRNA:   3'- gCCAGUCG--CGGCGuCGUaagcCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 59210 0.68 0.487882
Target:  5'- gCGGgcgcucacgcccgagCAGCGCCGCcGC---UGGCGCGa -3'
miRNA:   3'- -GCCa--------------GUCGCGGCGuCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 13677 0.68 0.489872
Target:  5'- uCGGUCAGCGagCGCucGGCcggcuucuguucgcgCGGCGCGg -3'
miRNA:   3'- -GCCAGUCGCg-GCG--UCGuaa------------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 59654 0.67 0.506931
Target:  5'- aCGGcgccacgCGGCGCCGUuuuuuuaugcccGGCuUUCGcGCGCGg -3'
miRNA:   3'- -GCCa------GUCGCGGCG------------UCGuAAGC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 19528 0.67 0.517084
Target:  5'- gCGGUCAGaaaauCGCgCGuCAGCcagUGGCGCGa -3'
miRNA:   3'- -GCCAGUC-----GCG-GC-GUCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 13722 0.67 0.517084
Target:  5'- uCGGUCGGCGCaGCGGCcUUCGuCucCGg -3'
miRNA:   3'- -GCCAGUCGCGgCGUCGuAAGCcGu-GC- -5'
24108 3' -58.5 NC_005262.1 + 23228 0.67 0.517084
Target:  5'- aCGGUCgcGGCaccGCCGguGUugccCGGCGCGu -3'
miRNA:   3'- -GCCAG--UCG---CGGCguCGuaa-GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 50940 0.67 0.517084
Target:  5'- aCGG-CAGCGCga-AGC--UCGGCACGa -3'
miRNA:   3'- -GCCaGUCGCGgcgUCGuaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 50740 0.66 0.600673
Target:  5'- cCGGUCaAGCcacaaucgGCCGCAGCucgaCGcGCACc -3'
miRNA:   3'- -GCCAG-UCG--------CGGCGUCGuaa-GC-CGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.