miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 56600 0.68 0.473085
Target:  5'- cCGGUCuuacaaugcaaucGCGCCGCAauuacGCGguagCGGCAUGc -3'
miRNA:   3'- -GCCAGu------------CGCGGCGU-----CGUaa--GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 46907 0.66 0.568932
Target:  5'- gCGGUgCGGUGUggUGCGGCc--CGGCGCGc -3'
miRNA:   3'- -GCCA-GUCGCG--GCGUCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 10460 0.69 0.384318
Target:  5'- gCGGUCGGCGagGUAGCgg-CGcGCGCGg -3'
miRNA:   3'- -GCCAGUCGCggCGUCGuaaGC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 53004 0.66 0.575252
Target:  5'- gCGG-CAGCuCgCGCAGCAguaccgcgcgccCGGCGCGg -3'
miRNA:   3'- -GCCaGUCGcG-GCGUCGUaa----------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 56083 0.77 0.13367
Target:  5'- gCGGUCAGCGCaagauGCAGCucgaggaggCGGCGCa -3'
miRNA:   3'- -GCCAGUCGCGg----CGUCGuaa------GCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 41218 0.67 0.537624
Target:  5'- ---gCAGCGCCGC-GCAUgCGGC-CGc -3'
miRNA:   3'- gccaGUCGCGGCGuCGUAaGCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 39590 0.67 0.517084
Target:  5'- cCGGcgCAGCGUCGCGGCugccgccUCGG-GCGu -3'
miRNA:   3'- -GCCa-GUCGCGGCGUCGua-----AGCCgUGC- -5'
24108 3' -58.5 NC_005262.1 + 9363 0.75 0.169959
Target:  5'- cCGGUCGGCGCgCGCGGCGgcCuGCGCc -3'
miRNA:   3'- -GCCAGUCGCG-GCGUCGUaaGcCGUGc -5'
24108 3' -58.5 NC_005262.1 + 12428 0.73 0.226067
Target:  5'- uGGcCGGCGUCGCGGa---CGGCGCGg -3'
miRNA:   3'- gCCaGUCGCGGCGUCguaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 6367 0.72 0.276159
Target:  5'- gCGGaCGGUGCCGgAGCGUugUCGGC-CGc -3'
miRNA:   3'- -GCCaGUCGCGGCgUCGUA--AGCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 17338 0.71 0.304367
Target:  5'- uGGcCGGCGCgGCAuucggguccggcGCGggCGGCGCGg -3'
miRNA:   3'- gCCaGUCGCGgCGU------------CGUaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 15095 0.71 0.31928
Target:  5'- aCGcGUCuuucuGCGgCGCGGCGUcCGGCugGa -3'
miRNA:   3'- -GC-CAGu----CGCgGCGUCGUAaGCCGugC- -5'
24108 3' -58.5 NC_005262.1 + 15714 0.7 0.334734
Target:  5'- gCGcGUCGGCGCCggGCGGCucgucgCGGCAgGu -3'
miRNA:   3'- -GC-CAGUCGCGG--CGUCGuaa---GCCGUgC- -5'
24108 3' -58.5 NC_005262.1 + 46115 0.66 0.579474
Target:  5'- aCGGcCGGCuucuucGCCGCuuccAGC--UCGGCGCGc -3'
miRNA:   3'- -GCCaGUCG------CGGCG----UCGuaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 17262 0.69 0.401894
Target:  5'- gCGGcCGGCGCCGCgcugGGCug-CuGCGCGg -3'
miRNA:   3'- -GCCaGUCGCGGCG----UCGuaaGcCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 5590 0.69 0.419972
Target:  5'- aCGGgCGGCGCCGCucuccGCAggCGaCGCGg -3'
miRNA:   3'- -GCCaGUCGCGGCGu----CGUaaGCcGUGC- -5'
24108 3' -58.5 NC_005262.1 + 62555 0.69 0.429193
Target:  5'- cCGcUCAGCGCCGaAGCAcUUCGG-ACGg -3'
miRNA:   3'- -GCcAGUCGCGGCgUCGU-AAGCCgUGC- -5'
24108 3' -58.5 NC_005262.1 + 34006 0.68 0.457555
Target:  5'- aGGUUgcuggGGUGCCGCGcCGUcCGGCACu -3'
miRNA:   3'- gCCAG-----UCGCGGCGUcGUAaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 59210 0.68 0.487882
Target:  5'- gCGGgcgcucacgcccgagCAGCGCCGCcGC---UGGCGCGa -3'
miRNA:   3'- -GCCa--------------GUCGCGGCGuCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 19528 0.67 0.517084
Target:  5'- gCGGUCAGaaaauCGCgCGuCAGCcagUGGCGCGa -3'
miRNA:   3'- -GCCAGUC-----GCG-GC-GUCGuaaGCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.