miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 46697 0.71 0.289994
Target:  5'- -aGUCAGCGCCGCGcgcGCAguggacaagcCGGCGCa -3'
miRNA:   3'- gcCAGUCGCGGCGU---CGUaa--------GCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 48956 0.68 0.466257
Target:  5'- uGGUCGccagcauGaCGCCGCAgauGCAggCGGCGCu -3'
miRNA:   3'- gCCAGU-------C-GCGGCGU---CGUaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 50406 0.68 0.454673
Target:  5'- gCGGcgaUCAGCGCCGCGGagcgcgagggccgCGuGCACGu -3'
miRNA:   3'- -GCC---AGUCGCGGCGUCguaa---------GC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 17545 0.73 0.23782
Target:  5'- gCGGUCGcGCGCgagGCGGCAgccgcggCGGCGCGc -3'
miRNA:   3'- -GCCAGU-CGCGg--CGUCGUaa-----GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 2155 0.73 0.226067
Target:  5'- uCGGUCAGCGCaucagCGCGGCuauugUCGG-ACGg -3'
miRNA:   3'- -GCCAGUCGCG-----GCGUCGua---AGCCgUGC- -5'
24108 3' -58.5 NC_005262.1 + 24327 0.77 0.13367
Target:  5'- uGGUCGGCGCgaucgacaUGCGGCucugcgUCGGCGCGc -3'
miRNA:   3'- gCCAGUCGCG--------GCGUCGua----AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 55966 0.71 0.297113
Target:  5'- uGGUCA-CGCCGgAGcCGUUCGGCuACa -3'
miRNA:   3'- gCCAGUcGCGGCgUC-GUAAGCCG-UGc -5'
24108 3' -58.5 NC_005262.1 + 42240 0.7 0.334734
Target:  5'- gCGGUUccgaugccgAGCGCCGCgcucacugcGGCGacgagCGGCACGg -3'
miRNA:   3'- -GCCAG---------UCGCGGCG---------UCGUaa---GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 40994 0.66 0.600673
Target:  5'- gCGG-CGGCGCuCGCuGCugaUGGCACc -3'
miRNA:   3'- -GCCaGUCGCG-GCGuCGuaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 35840 0.68 0.438533
Target:  5'- gGcGUCGGCGCCGCGaccGCccagauGUUUGuGCGCGg -3'
miRNA:   3'- gC-CAGUCGCGGCGU---CG------UAAGC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 36528 0.69 0.429193
Target:  5'- aCGGUCGGCGCgGCgacuGGgAUUaucgGGCGCa -3'
miRNA:   3'- -GCCAGUCGCGgCG----UCgUAAg---CCGUGc -5'
24108 3' -58.5 NC_005262.1 + 36730 0.66 0.600673
Target:  5'- gGGcUGGCGCCGCGGgcgcaGUUCuGCGCa -3'
miRNA:   3'- gCCaGUCGCGGCGUCg----UAAGcCGUGc -5'
24108 3' -58.5 NC_005262.1 + 24205 0.66 0.590056
Target:  5'- aGG-CGGCaGCCGCGacGCugcgcCGGCACGc -3'
miRNA:   3'- gCCaGUCG-CGGCGU--CGuaa--GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 14536 0.66 0.590056
Target:  5'- uGG-CAGUGCCGU-GCAUgcgcuggaUCGGCAgGc -3'
miRNA:   3'- gCCaGUCGCGGCGuCGUA--------AGCCGUgC- -5'
24108 3' -58.5 NC_005262.1 + 7530 0.66 0.590056
Target:  5'- aGGuUCGGCGgCGCG----UCGGCGCGc -3'
miRNA:   3'- gCC-AGUCGCgGCGUcguaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 40295 0.66 0.568932
Target:  5'- aGGgaaCGGgGCCGCAGCAguucaacccCGGCGa- -3'
miRNA:   3'- gCCa--GUCgCGGCGUCGUaa-------GCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 4687 0.68 0.457555
Target:  5'- cCGGaUCGG-GCCGCGGCAUccagUCGuuGCGCa -3'
miRNA:   3'- -GCC-AGUCgCGGCGUCGUA----AGC--CGUGc -5'
24108 3' -58.5 NC_005262.1 + 35656 0.68 0.465286
Target:  5'- gGGcuacUCGGUGCCGCAGCucgugcucacgUCgagcgGGCACGg -3'
miRNA:   3'- gCC----AGUCGCGGCGUCGua---------AG-----CCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 21686 0.68 0.447988
Target:  5'- gCGG-CGGCGCCGCGcuGCuguacgCGgGCACGc -3'
miRNA:   3'- -GCCaGUCGCGGCGU--CGuaa---GC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 12325 0.7 0.342665
Target:  5'- gCGGcUC-GUGCCGCAGCGcgCGGCGg- -3'
miRNA:   3'- -GCC-AGuCGCGGCGUCGUaaGCCGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.