Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24108 | 3' | -58.5 | NC_005262.1 | + | 4687 | 0.68 | 0.457555 |
Target: 5'- cCGGaUCGG-GCCGCGGCAUccagUCGuuGCGCa -3' miRNA: 3'- -GCC-AGUCgCGGCGUCGUA----AGC--CGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 35656 | 0.68 | 0.465286 |
Target: 5'- gGGcuacUCGGUGCCGCAGCucgugcucacgUCgagcgGGCACGg -3' miRNA: 3'- gCC----AGUCGCGGCGUCGua---------AG-----CCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 48956 | 0.68 | 0.466257 |
Target: 5'- uGGUCGccagcauGaCGCCGCAgauGCAggCGGCGCu -3' miRNA: 3'- gCCAGU-------C-GCGGCGU---CGUaaGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 36730 | 0.66 | 0.600673 |
Target: 5'- gGGcUGGCGCCGCGGgcgcaGUUCuGCGCa -3' miRNA: 3'- gCCaGUCGCGGCGUCg----UAAGcCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 24205 | 0.66 | 0.590056 |
Target: 5'- aGG-CGGCaGCCGCGacGCugcgcCGGCACGc -3' miRNA: 3'- gCCaGUCG-CGGCGU--CGuaa--GCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 14536 | 0.66 | 0.590056 |
Target: 5'- uGG-CAGUGCCGU-GCAUgcgcuggaUCGGCAgGc -3' miRNA: 3'- gCCaGUCGCGGCGuCGUA--------AGCCGUgC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 7530 | 0.66 | 0.590056 |
Target: 5'- aGGuUCGGCGgCGCG----UCGGCGCGc -3' miRNA: 3'- gCC-AGUCGCgGCGUcguaAGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 40295 | 0.66 | 0.568932 |
Target: 5'- aGGgaaCGGgGCCGCAGCAguucaacccCGGCGa- -3' miRNA: 3'- gCCa--GUCgCGGCGUCGUaa-------GCCGUgc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 15145 | 0.66 | 0.558438 |
Target: 5'- gCGGcCGGCGUCGag----UCGGCGCGg -3' miRNA: 3'- -GCCaGUCGCGGCgucguaAGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 22572 | 0.67 | 0.548 |
Target: 5'- cCGGccUUAGCgGCCGCAuGCg--CGGCGCu -3' miRNA: 3'- -GCC--AGUCG-CGGCGU-CGuaaGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 45709 | 0.67 | 0.548 |
Target: 5'- cCGG-CAGCcgGCCGUgaucgAGCAgUUCGGCAUc -3' miRNA: 3'- -GCCaGUCG--CGGCG-----UCGU-AAGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 7011 | 0.67 | 0.548 |
Target: 5'- ---aCAGCGCgGCGGC-UUCGGUggACGu -3' miRNA: 3'- gccaGUCGCGgCGUCGuAAGCCG--UGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 53455 | 0.67 | 0.54696 |
Target: 5'- gCGGcgcCGGCGUCGaggacaaCGGCGUgaaguggcUCGGCACGg -3' miRNA: 3'- -GCCa--GUCGCGGC-------GUCGUA--------AGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 18720 | 0.67 | 0.537624 |
Target: 5'- gGcGUCaaGGCGCUccuCAGC-UUCGGCGCGg -3' miRNA: 3'- gC-CAG--UCGCGGc--GUCGuAAGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 5138 | 0.67 | 0.517084 |
Target: 5'- aCGGgCGGCGCUGauccuGC--UCGGCGCGc -3' miRNA: 3'- -GCCaGUCGCGGCgu---CGuaAGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 41664 | 0.67 | 0.517084 |
Target: 5'- cCGG-CGGCGCCGUcaucgccgccGGCAccggcaUCGGCAUc -3' miRNA: 3'- -GCCaGUCGCGGCG----------UCGUa-----AGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 41264 | 0.67 | 0.506931 |
Target: 5'- aCGG-CGGCGaucaCGCAG-AUUCGGcCGCGc -3' miRNA: 3'- -GCCaGUCGCg---GCGUCgUAAGCC-GUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 24087 | 0.67 | 0.496865 |
Target: 5'- aCGaUCAGCGUCGCGGUcgaugCGGCggACGg -3' miRNA: 3'- -GCcAGUCGCGGCGUCGuaa--GCCG--UGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 12805 | 0.67 | 0.496865 |
Target: 5'- uGGgCGGCG-CGCAGC---CGGCGCGu -3' miRNA: 3'- gCCaGUCGCgGCGUCGuaaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 21768 | 0.68 | 0.46723 |
Target: 5'- aCGcGUCAaCGUCGCcaAGCAUcUCGGCAUGc -3' miRNA: 3'- -GC-CAGUcGCGGCG--UCGUA-AGCCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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