Results 101 - 113 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24108 | 3' | -58.5 | NC_005262.1 | + | 13142 | 0.67 | 0.517084 |
Target: 5'- aGGUCcgccGCGCgCGCuGCg--CGGCACa -3' miRNA: 3'- gCCAGu---CGCG-GCGuCGuaaGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 4687 | 0.68 | 0.457555 |
Target: 5'- cCGGaUCGG-GCCGCGGCAUccagUCGuuGCGCa -3' miRNA: 3'- -GCC-AGUCgCGGCGUCGUA----AGC--CGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 35656 | 0.68 | 0.465286 |
Target: 5'- gGGcuacUCGGUGCCGCAGCucgugcucacgUCgagcgGGCACGg -3' miRNA: 3'- gCC----AGUCGCGGCGUCGua---------AG-----CCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 48956 | 0.68 | 0.466257 |
Target: 5'- uGGUCGccagcauGaCGCCGCAgauGCAggCGGCGCu -3' miRNA: 3'- gCCAGU-------C-GCGGCGU---CGUaaGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 21768 | 0.68 | 0.46723 |
Target: 5'- aCGcGUCAaCGUCGCcaAGCAUcUCGGCAUGc -3' miRNA: 3'- -GC-CAGUcGCGGCG--UCGUA-AGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 43590 | 0.68 | 0.486889 |
Target: 5'- aGGUCAGCGCgaaCGCAGauaUCGcGCAgGu -3' miRNA: 3'- gCCAGUCGCG---GCGUCguaAGC-CGUgC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 24978 | 0.68 | 0.486889 |
Target: 5'- aGGcCGGCuugGUCgagGCGGCAUUCGaGCGCGg -3' miRNA: 3'- gCCaGUCG---CGG---CGUCGUAAGC-CGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 40600 | 0.68 | 0.486889 |
Target: 5'- aCGGUggcgCAGaUGCCGCAGCAUaaucaCGGCGu- -3' miRNA: 3'- -GCCA----GUC-GCGGCGUCGUAa----GCCGUgc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 48765 | 0.67 | 0.496865 |
Target: 5'- aGGUCGGCGCgaacaugGCAGCGcaggaCGuGCGCGa -3' miRNA: 3'- gCCAGUCGCGg------CGUCGUaa---GC-CGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 12805 | 0.67 | 0.496865 |
Target: 5'- uGGgCGGCG-CGCAGC---CGGCGCGu -3' miRNA: 3'- gCCaGUCGCgGCGUCGuaaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 24087 | 0.67 | 0.496865 |
Target: 5'- aCGaUCAGCGUCGCGGUcgaugCGGCggACGg -3' miRNA: 3'- -GCcAGUCGCGGCGUCGuaa--GCCG--UGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 41264 | 0.67 | 0.506931 |
Target: 5'- aCGG-CGGCGaucaCGCAG-AUUCGGcCGCGc -3' miRNA: 3'- -GCCaGUCGCg---GCGUCgUAAGCC-GUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 40994 | 0.66 | 0.600673 |
Target: 5'- gCGG-CGGCGCuCGCuGCugaUGGCACc -3' miRNA: 3'- -GCCaGUCGCG-GCGuCGuaaGCCGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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