miRNA display CGI


Results 21 - 40 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 45709 0.67 0.548
Target:  5'- cCGG-CAGCcgGCCGUgaucgAGCAgUUCGGCAUc -3'
miRNA:   3'- -GCCaGUCG--CGGCG-----UCGU-AAGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 7011 0.67 0.548
Target:  5'- ---aCAGCGCgGCGGC-UUCGGUggACGu -3'
miRNA:   3'- gccaGUCGCGgCGUCGuAAGCCG--UGC- -5'
24108 3' -58.5 NC_005262.1 + 53455 0.67 0.54696
Target:  5'- gCGGcgcCGGCGUCGaggacaaCGGCGUgaaguggcUCGGCACGg -3'
miRNA:   3'- -GCCa--GUCGCGGC-------GUCGUA--------AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 18720 0.67 0.537624
Target:  5'- gGcGUCaaGGCGCUccuCAGC-UUCGGCGCGg -3'
miRNA:   3'- gC-CAG--UCGCGGc--GUCGuAAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 41218 0.67 0.537624
Target:  5'- ---gCAGCGCCGC-GCAUgCGGC-CGc -3'
miRNA:   3'- gccaGUCGCGGCGuCGUAaGCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 5084 0.67 0.527317
Target:  5'- gCGGUCAGCgccucgggcauGCCGcCAGCuugUUGcGCGCu -3'
miRNA:   3'- -GCCAGUCG-----------CGGC-GUCGua-AGC-CGUGc -5'
24108 3' -58.5 NC_005262.1 + 2776 0.67 0.527317
Target:  5'- gCGGUUAGCagacgucucgGCgaGCGGCuugaugacggUCGGCACGg -3'
miRNA:   3'- -GCCAGUCG----------CGg-CGUCGua--------AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 41664 0.67 0.517084
Target:  5'- cCGG-CGGCGCCGUcaucgccgccGGCAccggcaUCGGCAUc -3'
miRNA:   3'- -GCCaGUCGCGGCG----------UCGUa-----AGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 13142 0.67 0.517084
Target:  5'- aGGUCcgccGCGCgCGCuGCg--CGGCACa -3'
miRNA:   3'- gCCAGu---CGCG-GCGuCGuaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 5138 0.67 0.517084
Target:  5'- aCGGgCGGCGCUGauccuGC--UCGGCGCGc -3'
miRNA:   3'- -GCCaGUCGCGGCgu---CGuaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 19528 0.67 0.517084
Target:  5'- gCGGUCAGaaaauCGCgCGuCAGCcagUGGCGCGa -3'
miRNA:   3'- -GCCAGUC-----GCG-GC-GUCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 13722 0.67 0.517084
Target:  5'- uCGGUCGGCGCaGCGGCcUUCGuCucCGg -3'
miRNA:   3'- -GCCAGUCGCGgCGUCGuAAGCcGu-GC- -5'
24108 3' -58.5 NC_005262.1 + 39590 0.67 0.517084
Target:  5'- cCGGcgCAGCGUCGCGGCugccgccUCGG-GCGu -3'
miRNA:   3'- -GCCa-GUCGCGGCGUCGua-----AGCCgUGC- -5'
24108 3' -58.5 NC_005262.1 + 50940 0.67 0.517084
Target:  5'- aCGG-CAGCGCga-AGC--UCGGCACGa -3'
miRNA:   3'- -GCCaGUCGCGgcgUCGuaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 23228 0.67 0.517084
Target:  5'- aCGGUCgcGGCaccGCCGguGUugccCGGCGCGu -3'
miRNA:   3'- -GCCAG--UCG---CGGCguCGuaa-GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 59654 0.67 0.506931
Target:  5'- aCGGcgccacgCGGCGCCGUuuuuuuaugcccGGCuUUCGcGCGCGg -3'
miRNA:   3'- -GCCa------GUCGCGGCG------------UCGuAAGC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 41264 0.67 0.506931
Target:  5'- aCGG-CGGCGaucaCGCAG-AUUCGGcCGCGc -3'
miRNA:   3'- -GCCaGUCGCg---GCGUCgUAAGCC-GUGC- -5'
24108 3' -58.5 NC_005262.1 + 24087 0.67 0.496865
Target:  5'- aCGaUCAGCGUCGCGGUcgaugCGGCggACGg -3'
miRNA:   3'- -GCcAGUCGCGGCGUCGuaa--GCCG--UGC- -5'
24108 3' -58.5 NC_005262.1 + 48765 0.67 0.496865
Target:  5'- aGGUCGGCGCgaacaugGCAGCGcaggaCGuGCGCGa -3'
miRNA:   3'- gCCAGUCGCGg------CGUCGUaa---GC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 12805 0.67 0.496865
Target:  5'- uGGgCGGCG-CGCAGC---CGGCGCGu -3'
miRNA:   3'- gCCaGUCGCgGCGUCGuaaGCCGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.