miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 5' -54.6 NC_005262.1 + 5207 0.67 0.723516
Target:  5'- -gCGCGaCCGAGGGCGu--AUCCUGcACg -3'
miRNA:   3'- aaGCGC-GGCUUUCGCcuuUAGGGC-UG- -5'
24108 5' -54.6 NC_005262.1 + 36404 0.67 0.7128
Target:  5'- -cCGuCGCCGAAGuccacguucGCGGAGG-CgCCGACg -3'
miRNA:   3'- aaGC-GCGGCUUU---------CGCCUUUaG-GGCUG- -5'
24108 5' -54.6 NC_005262.1 + 17548 0.67 0.7128
Target:  5'- gUCGCGCgCG-AGGCGGcag-CCgCGGCg -3'
miRNA:   3'- aAGCGCG-GCuUUCGCCuuuaGG-GCUG- -5'
24108 5' -54.6 NC_005262.1 + 23839 0.67 0.709569
Target:  5'- --gGCGCCGGcGAGCGcaaggagagagggaGGAAUCCCGcGCg -3'
miRNA:   3'- aagCGCGGCU-UUCGC--------------CUUUAGGGC-UG- -5'
24108 5' -54.6 NC_005262.1 + 31522 0.67 0.69114
Target:  5'- -cCGCGCCGuaaucguuGAAGCGGAucacGUUgCGAUg -3'
miRNA:   3'- aaGCGCGGC--------UUUCGCCUu---UAGgGCUG- -5'
24108 5' -54.6 NC_005262.1 + 45070 0.67 0.690051
Target:  5'- -cCGCGCCGAagcugagGAGCGccuuGAcgCCUGGCg -3'
miRNA:   3'- aaGCGCGGCU-------UUCGCc---UUuaGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 17017 0.67 0.680219
Target:  5'- gUCGUGCUGAAgucgaccgaGGCGGAAAagcagcUCCgCGAg -3'
miRNA:   3'- aAGCGCGGCUU---------UCGCCUUU------AGG-GCUg -5'
24108 5' -54.6 NC_005262.1 + 36474 0.68 0.669251
Target:  5'- -gCGCGCgCGAGgcuGGCGGAcAUCgCGAa -3'
miRNA:   3'- aaGCGCG-GCUU---UCGCCUuUAGgGCUg -5'
24108 5' -54.6 NC_005262.1 + 39882 0.68 0.669251
Target:  5'- -aCGCcuuGCCGAAcgccucGGCGucGAUCCUGACa -3'
miRNA:   3'- aaGCG---CGGCUU------UCGCcuUUAGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 22680 0.68 0.669251
Target:  5'- -gCGCGCCGuGAcGCGcacGAUCUCGACg -3'
miRNA:   3'- aaGCGCGGCuUU-CGCcu-UUAGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 20217 0.68 0.665954
Target:  5'- gUUCGCGCUGAccucGAccucccacgucugcGCGaGGAAUCCgGACg -3'
miRNA:   3'- -AAGCGCGGCU----UU--------------CGC-CUUUAGGgCUG- -5'
24108 5' -54.6 NC_005262.1 + 49642 0.68 0.658249
Target:  5'- cUCgGCGC----GGCGGAcAAUCCCGGCg -3'
miRNA:   3'- aAG-CGCGgcuuUCGCCU-UUAGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 40559 0.68 0.657147
Target:  5'- -aCGCGCCGGGcaacaccGGCGGug--CCgCGACc -3'
miRNA:   3'- aaGCGCGGCUU-------UCGCCuuuaGG-GCUG- -5'
24108 5' -54.6 NC_005262.1 + 48146 0.68 0.647222
Target:  5'- aUCGCG--GAAGGCGaGggGgaugCCCGACg -3'
miRNA:   3'- aAGCGCggCUUUCGC-CuuUa---GGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 50702 0.68 0.647222
Target:  5'- cUCGCGCgaGAAGGCGcAGAccuUCCuCGACa -3'
miRNA:   3'- aAGCGCGg-CUUUCGCcUUU---AGG-GCUG- -5'
24108 5' -54.6 NC_005262.1 + 2663 0.68 0.647222
Target:  5'- --gGCGCCG--GGCGGc-GUCCUGGCc -3'
miRNA:   3'- aagCGCGGCuuUCGCCuuUAGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 48017 0.68 0.636181
Target:  5'- gUUGcCGCCGAAGaugaGGAAGUCgCCGGCc -3'
miRNA:   3'- aAGC-GCGGCUUUcg--CCUUUAG-GGCUG- -5'
24108 5' -54.6 NC_005262.1 + 9145 0.68 0.636181
Target:  5'- -cCGgGCCGGucggaauGCGGAucaCCCGGCg -3'
miRNA:   3'- aaGCgCGGCUuu-----CGCCUuuaGGGCUG- -5'
24108 5' -54.6 NC_005262.1 + 33928 0.68 0.625136
Target:  5'- --gGUGCCGAGcucgcGGCGGGcacgcggcaagcGAUCCCGGa -3'
miRNA:   3'- aagCGCGGCUU-----UCGCCU------------UUAGGGCUg -5'
24108 5' -54.6 NC_005262.1 + 35235 0.68 0.625136
Target:  5'- gUCGCGCgCGc-GGCGGAAGcCCCaGAUa -3'
miRNA:   3'- aAGCGCG-GCuuUCGCCUUUaGGG-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.