miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24109 5' -52.8 NC_005262.1 + 11402 0.67 0.811248
Target:  5'- uCCAcgccGAAGCCGcgCCGcGCCGGGCc-- -3'
miRNA:   3'- -GGUa---CUUCGGCa-GGCuCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 56782 0.67 0.807464
Target:  5'- aCAUGAAGCUGgccggccugaaggCCGAcGUCGAGCg-- -3'
miRNA:   3'- gGUACUUCGGCa------------GGCU-CGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 12280 0.68 0.782183
Target:  5'- ---cGcGGCCGg-CGAGCCGAGCUUu -3'
miRNA:   3'- gguaCuUCGGCagGCUCGGCUUGAAc -5'
24109 5' -52.8 NC_005262.1 + 26780 0.68 0.76201
Target:  5'- gCCAUGAAccGCCG-CCGAuguccgucucGCCGAcguuCUUGg -3'
miRNA:   3'- -GGUACUU--CGGCaGGCU----------CGGCUu---GAAC- -5'
24109 5' -52.8 NC_005262.1 + 8227 0.68 0.76201
Target:  5'- gCCAUG-AGCUGUCgGcgaagcucgaAGCCGAGCg-- -3'
miRNA:   3'- -GGUACuUCGGCAGgC----------UCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 33312 0.71 0.643972
Target:  5'- ---cGAAGCCGU-CGAGUCGGACg-- -3'
miRNA:   3'- gguaCUUCGGCAgGCUCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 21877 0.71 0.643972
Target:  5'- --cUGAAGCCGaCCGcgcAGCCGGACg-- -3'
miRNA:   3'- gguACUUCGGCaGGC---UCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 9129 0.71 0.643972
Target:  5'- gCUAUGAGGaCCGgcgCCGGGCCGGu---- -3'
miRNA:   3'- -GGUACUUC-GGCa--GGCUCGGCUugaac -5'
24109 5' -52.8 NC_005262.1 + 4825 0.71 0.63296
Target:  5'- gCGUGAGGCCG-CCGgcGGCCG-GCUg- -3'
miRNA:   3'- gGUACUUCGGCaGGC--UCGGCuUGAac -5'
24109 5' -52.8 NC_005262.1 + 23670 0.72 0.567206
Target:  5'- uCCGUGGAuGCCGcCCGAGCgGcGCgugUGg -3'
miRNA:   3'- -GGUACUU-CGGCaGGCUCGgCuUGa--AC- -5'
24109 5' -52.8 NC_005262.1 + 14882 0.73 0.513765
Target:  5'- uUCAgGAGGUCGUCCGAGCC---CUUGa -3'
miRNA:   3'- -GGUaCUUCGGCAGGCUCGGcuuGAAC- -5'
24109 5' -52.8 NC_005262.1 + 42077 0.75 0.404734
Target:  5'- gCCuUGAGGCCGUCCuuGCCGAuCUg- -3'
miRNA:   3'- -GGuACUUCGGCAGGcuCGGCUuGAac -5'
24109 5' -52.8 NC_005262.1 + 47003 0.78 0.261135
Target:  5'- uCCAUGAGcucGCCGUCCGGGCUGAu---- -3'
miRNA:   3'- -GGUACUU---CGGCAGGCUCGGCUugaac -5'
24109 5' -52.8 NC_005262.1 + 63618 1.12 0.001557
Target:  5'- aCCAUGAAGCCGUCCGAGCCGAACUUGa -3'
miRNA:   3'- -GGUACUUCGGCAGGCUCGGCUUGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.