Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24110 | 3' | -61.1 | NC_005263.2 | + | 28934 | 0.69 | 0.255558 |
Target: 5'- cGCGCGGCcacgaGCC-GCGCCGGCGGauGCAc -3' miRNA: 3'- -UGUGCUGa----UGGcCGUGGCCGCC--CGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 5226 | 0.69 | 0.236392 |
Target: 5'- cGCGCGGCacGCCauugacgcgaucaGGCGCCGucaucaGCGGGCGGu -3' miRNA: 3'- -UGUGCUGa-UGG-------------CCGUGGC------CGCCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 2378 | 0.69 | 0.22872 |
Target: 5'- gACGCGGCguaacccaugaCGGCGCCGGCGGucGCu- -3' miRNA: 3'- -UGUGCUGaug--------GCCGUGGCCGCC--CGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 897 | 0.7 | 0.214007 |
Target: 5'- aGCGCGGCggUCGcCGCCGGCGGGUu- -3' miRNA: 3'- -UGUGCUGauGGCcGUGGCCGCCCGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 1338 | 0.7 | 0.223532 |
Target: 5'- aACACGAUcacgGCCGGUugcagaaucuuuuuGCCGGC-GGCGGc -3' miRNA: 3'- -UGUGCUGa---UGGCCG--------------UGGCCGcCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 28787 | 0.7 | 0.22525 |
Target: 5'- gACAuCGACcACCGcacaGCCGGCGGGCc- -3' miRNA: 3'- -UGU-GCUGaUGGCcg--UGGCCGCCCGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 3338 | 0.7 | 0.219567 |
Target: 5'- uGCGCG-CcGCCGGCGCCGcGCGcGGUc- -3' miRNA: 3'- -UGUGCuGaUGGCCGUGGC-CGC-CCGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 43052 | 0.7 | 0.203249 |
Target: 5'- gGCGCGACaaugGCCcGCGuuGGCGGGUu- -3' miRNA: 3'- -UGUGCUGa---UGGcCGUggCCGCCCGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 9477 | 0.7 | 0.219567 |
Target: 5'- gACGCGGCUucauucgcGCCGGCGCUauccaucgcguGcGCGGGCuGa -3' miRNA: 3'- -UGUGCUGA--------UGGCCGUGG-----------C-CGCCCGuC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 22473 | 0.7 | 0.208031 |
Target: 5'- uCACGAUUgcuucuccuugucGCCGGCGgCGGCcGGCGGc -3' miRNA: 3'- uGUGCUGA-------------UGGCCGUgGCCGcCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 17733 | 0.71 | 0.192963 |
Target: 5'- cGCAUggGGCUcgcACuCGGCGCCGGC-GGCAGc -3' miRNA: 3'- -UGUG--CUGA---UG-GCCGUGGCCGcCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 18155 | 0.71 | 0.187993 |
Target: 5'- uCACaGCUAUCGGCGgCGGCGuuGGCGGc -3' miRNA: 3'- uGUGcUGAUGGCCGUgGCCGC--CCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 27378 | 0.71 | 0.178391 |
Target: 5'- gGCGCGGCggcgGCCGGCgcgcugACCGGCugcgucacgaccGGcGCAGg -3' miRNA: 3'- -UGUGCUGa---UGGCCG------UGGCCG------------CC-CGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 46159 | 0.71 | 0.178391 |
Target: 5'- gACGCGGUUGCCGGCgucGCCGGUGccGGCGc -3' miRNA: 3'- -UGUGCUGAUGGCCG---UGGCCGC--CCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 16421 | 0.72 | 0.164804 |
Target: 5'- uACuCGGCgu-CGGCGCUGGCGcGGCGGg -3' miRNA: 3'- -UGuGCUGaugGCCGUGGCCGC-CCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 10868 | 0.72 | 0.160485 |
Target: 5'- uCGCGGCggaACuCGGCACCGGCGcGCGu -3' miRNA: 3'- uGUGCUGa--UG-GCCGUGGCCGCcCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 44762 | 0.73 | 0.126004 |
Target: 5'- cGCuCGACcgcGCgCGGCGCCGGCGGcgcGCAGa -3' miRNA: 3'- -UGuGCUGa--UG-GCCGUGGCCGCC---CGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 15457 | 0.73 | 0.125663 |
Target: 5'- aGCGCGAaaugagcgacgauUUGCCGuGCugCGGCGGcGCGGu -3' miRNA: 3'- -UGUGCU-------------GAUGGC-CGugGCCGCC-CGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 10154 | 0.74 | 0.116123 |
Target: 5'- gGCGCGGCaucgGCCGGUugcgcaccggcuGCCGGCGGcGCGc -3' miRNA: 3'- -UGUGCUGa---UGGCCG------------UGGCCGCC-CGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 1932 | 0.77 | 0.063063 |
Target: 5'- uGCACGAgCgcGCCGGCACCGGCGacgccGGCAa -3' miRNA: 3'- -UGUGCU-Ga-UGGCCGUGGCCGC-----CCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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