Results 61 - 65 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24110 | 3' | -61.1 | NC_005263.2 | + | 44762 | 0.73 | 0.126004 |
Target: 5'- cGCuCGACcgcGCgCGGCGCCGGCGGcgcGCAGa -3' miRNA: 3'- -UGuGCUGa--UG-GCCGUGGCCGCC---CGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 45718 | 0.68 | 0.296245 |
Target: 5'- -aGCGACcGCCGGCGCCGucaUGGGUu- -3' miRNA: 3'- ugUGCUGaUGGCCGUGGCc--GCCCGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 46159 | 0.71 | 0.178391 |
Target: 5'- gACGCGGUUGCCGGCgucGCCGGUGccGGCGc -3' miRNA: 3'- -UGUGCUGAUGGCCG---UGGCCGC--CCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 47220 | 0.67 | 0.326066 |
Target: 5'- -gGCGACcGCCGcgcugaacgaaGCGCCGGCcGGCAc -3' miRNA: 3'- ugUGCUGaUGGC-----------CGUGGCCGcCCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 48007 | 1.08 | 0.000261 |
Target: 5'- gACACGACUACCGGCACCGGCGGGCAGg -3' miRNA: 3'- -UGUGCUGAUGGCCGUGGCCGCCCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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