miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24110 5' -53.7 NC_005263.2 + 47343 0.66 0.765595
Target:  5'- gGCUGCaguggacaggCACCUaucaGGUGCuGcAGGGCGCa -3'
miRNA:   3'- aUGAUGga--------GUGGA----CCAUG-C-UUCCGCG- -5'
24110 5' -53.7 NC_005263.2 + 10004 0.66 0.765595
Target:  5'- -uCUugCgCGCCaGGUGCG--GGCGCa -3'
miRNA:   3'- auGAugGaGUGGaCCAUGCuuCCGCG- -5'
24110 5' -53.7 NC_005263.2 + 7211 0.66 0.755072
Target:  5'- cGCgcgACCaUCGCC-GGcgACcaGAAGGCGCg -3'
miRNA:   3'- aUGa--UGG-AGUGGaCCa-UG--CUUCCGCG- -5'
24110 5' -53.7 NC_005263.2 + 40604 0.66 0.727124
Target:  5'- cGC-ACCUCGCCgucagcGGUGCGcggcacuucgaggccAAGcGCGCa -3'
miRNA:   3'- aUGaUGGAGUGGa-----CCAUGC---------------UUC-CGCG- -5'
24110 5' -53.7 NC_005263.2 + 33720 0.67 0.711781
Target:  5'- aUGCUGCCgCACCcGG-ACGAGcGGCccgGCa -3'
miRNA:   3'- -AUGAUGGaGUGGaCCaUGCUU-CCG---CG- -5'
24110 5' -53.7 NC_005263.2 + 20344 0.67 0.655894
Target:  5'- -cCUGCCgccgCACCU----CGggGGCGCg -3'
miRNA:   3'- auGAUGGa---GUGGAccauGCuuCCGCG- -5'
24110 5' -53.7 NC_005263.2 + 30365 0.67 0.655894
Target:  5'- cGCUGCCgccggCGCC-GaGUGCGAGccccaugcggcGGCGCu -3'
miRNA:   3'- aUGAUGGa----GUGGaC-CAUGCUU-----------CCGCG- -5'
24110 5' -53.7 NC_005263.2 + 4003 0.68 0.644601
Target:  5'- cUGCUGCgUgACCU----CGAAGGCGCa -3'
miRNA:   3'- -AUGAUGgAgUGGAccauGCUUCCGCG- -5'
24110 5' -53.7 NC_005263.2 + 42900 0.69 0.588166
Target:  5'- cGC-GCgCUCGCCUGGacGCGAGuGCGCg -3'
miRNA:   3'- aUGaUG-GAGUGGACCa-UGCUUcCGCG- -5'
24110 5' -53.7 NC_005263.2 + 26837 0.69 0.565795
Target:  5'- gACUGCCUCAUCgaacgucaGGcaaUACGu-GGCGCg -3'
miRNA:   3'- aUGAUGGAGUGGa-------CC---AUGCuuCCGCG- -5'
24110 5' -53.7 NC_005263.2 + 48012 0.7 0.532684
Target:  5'- gACUACCggCACCg---GCGGgcAGGCGCu -3'
miRNA:   3'- aUGAUGGa-GUGGaccaUGCU--UCCGCG- -5'
24110 5' -53.7 NC_005263.2 + 17397 0.7 0.521798
Target:  5'- gGCgcgGCCgcgCGCCUGGcggGCGGugucgcAGGUGCa -3'
miRNA:   3'- aUGa--UGGa--GUGGACCa--UGCU------UCCGCG- -5'
24110 5' -53.7 NC_005263.2 + 17082 0.77 0.19405
Target:  5'- gACUGCUUgAUCUGGUGCccGGGCGCc -3'
miRNA:   3'- aUGAUGGAgUGGACCAUGcuUCCGCG- -5'
24110 5' -53.7 NC_005263.2 + 48045 1.11 0.000802
Target:  5'- uUACUACCUCACCUGGUACGAAGGCGCg -3'
miRNA:   3'- -AUGAUGGAGUGGACCAUGCUUCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.