miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 5' -60.4 NC_005263.2 + 14470 0.68 0.351164
Target:  5'- aGCGGCGGCACGccuUCGag--CAUCGGa -3'
miRNA:   3'- cCGCCGCCGUGCu--AGCgcgaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 6057 0.68 0.312235
Target:  5'- -uUGGCGGCGCGcuUCaCGCgCGCCGAc -3'
miRNA:   3'- ccGCCGCCGUGCu-AGcGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 30459 0.68 0.312235
Target:  5'- cGCGGCGGCcu--UCGCGUUgCGCCa- -3'
miRNA:   3'- cCGCCGCCGugcuAGCGCGA-GUGGcu -5'
24112 5' -60.4 NC_005263.2 + 18932 0.68 0.319751
Target:  5'- cGC-GCGGCACGA--GCGCUCgagcgcGCCGGu -3'
miRNA:   3'- cCGcCGCCGUGCUagCGCGAG------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 33971 0.68 0.322796
Target:  5'- aGGCGGCcgcgcuggccgcugcGGCuACGAUCGCGaCggcgacCGCCGc -3'
miRNA:   3'- -CCGCCG---------------CCG-UGCUAGCGC-Ga-----GUGGCu -5'
24112 5' -60.4 NC_005263.2 + 24099 0.68 0.327403
Target:  5'- cGGCGGCGGCuACGugcCGgGCUaucaguacggCACCa- -3'
miRNA:   3'- -CCGCCGCCG-UGCua-GCgCGA----------GUGGcu -5'
24112 5' -60.4 NC_005263.2 + 28954 0.68 0.335189
Target:  5'- cGGCGGauGCACGGUCacgacgacGCGCaagCGCCc- -3'
miRNA:   3'- -CCGCCgcCGUGCUAG--------CGCGa--GUGGcu -5'
24112 5' -60.4 NC_005263.2 + 44385 0.68 0.335189
Target:  5'- cGGCccGGCGuGCGCGAg-GCGCUCAaucaaaccauUCGAa -3'
miRNA:   3'- -CCG--CCGC-CGUGCUagCGCGAGU----------GGCU- -5'
24112 5' -60.4 NC_005263.2 + 7375 0.68 0.34311
Target:  5'- cGCGGCgaucgGGUugguguucuuuGCGGUCGCGagugCGCCGAa -3'
miRNA:   3'- cCGCCG-----CCG-----------UGCUAGCGCga--GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 22005 0.68 0.351164
Target:  5'- aGCGGCGcGUACcaGGaCGCGCUCgGCCGc -3'
miRNA:   3'- cCGCCGC-CGUG--CUaGCGCGAG-UGGCu -5'
24112 5' -60.4 NC_005263.2 + 9002 0.68 0.319751
Target:  5'- -aCGGC-GCACGAgUCGCGCguacUCGCCGu -3'
miRNA:   3'- ccGCCGcCGUGCU-AGCGCG----AGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 38091 0.69 0.297606
Target:  5'- cGGCGGCGGUGC---UGCGCccgCACCu- -3'
miRNA:   3'- -CCGCCGCCGUGcuaGCGCGa--GUGGcu -5'
24112 5' -60.4 NC_005263.2 + 25898 0.69 0.304122
Target:  5'- cGGCGaCGGCcgcgacguacguaACGGUCGCGUU-GCCGGu -3'
miRNA:   3'- -CCGCcGCCG-------------UGCUAGCGCGAgUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 24783 0.69 0.290493
Target:  5'- --gGGCGGCGuCGG-CG-GCUCGCCGGg -3'
miRNA:   3'- ccgCCGCCGU-GCUaGCgCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 14266 0.69 0.276669
Target:  5'- cGGCGGcCGGCGCaa-CGCGCgCAUUGGg -3'
miRNA:   3'- -CCGCC-GCCGUGcuaGCGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 28078 0.69 0.276669
Target:  5'- cGC-GCGGCACGAUCccguguguugGCGCg-GCCGAu -3'
miRNA:   3'- cCGcCGCCGUGCUAG----------CGCGagUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 35540 0.69 0.276669
Target:  5'- cGGCGGC-GCGCGggCGgGCgcuacggCGCCGc -3'
miRNA:   3'- -CCGCCGcCGUGCuaGCgCGa------GUGGCu -5'
24112 5' -60.4 NC_005263.2 + 37846 0.69 0.290493
Target:  5'- cGCGGCGuuuCGCGAacCGCGUgCGCCGAa -3'
miRNA:   3'- cCGCCGCc--GUGCUa-GCGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 9823 0.69 0.293322
Target:  5'- gGGCGuGCaucacguugacgaacGGCGCGG-CGCGCUUGCuCGAc -3'
miRNA:   3'- -CCGC-CG---------------CCGUGCUaGCGCGAGUG-GCU- -5'
24112 5' -60.4 NC_005263.2 + 46292 0.69 0.307789
Target:  5'- cGGaCGGCGGCagcauccaggaacugACGAUCG-GCUCgaacGCCGu -3'
miRNA:   3'- -CC-GCCGCCG---------------UGCUAGCgCGAG----UGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.