miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 5' -60.4 NC_005263.2 + 40765 0.72 0.170031
Target:  5'- cGGCGGCGGCAa-GUCGCuccugaacgcgauGCUgAUCGAg -3'
miRNA:   3'- -CCGCCGCCGUgcUAGCG-------------CGAgUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 44898 0.72 0.170479
Target:  5'- --aGGuCGGCcCGAUcuggcCGCGCUCGCCGAc -3'
miRNA:   3'- ccgCC-GCCGuGCUA-----GCGCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 27968 0.71 0.20457
Target:  5'- cGGCGcGaCGGC-CGuaccGUCGCGCUUGCCGu -3'
miRNA:   3'- -CCGC-C-GCCGuGC----UAGCGCGAGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 9733 0.71 0.226599
Target:  5'- cGGCcucgGGCGGCACGccuUCgagGCGCauuUCGCCGGu -3'
miRNA:   3'- -CCG----CCGCCGUGCu--AG---CGCG---AGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 22232 0.71 0.22091
Target:  5'- cGGCGuCGGCcCGGUUGCGa-CGCCGAa -3'
miRNA:   3'- -CCGCcGCCGuGCUAGCGCgaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 27801 0.71 0.215343
Target:  5'- gGGaCGGCGGC-CGccAUCGCGUUCG-CGAa -3'
miRNA:   3'- -CC-GCCGCCGuGC--UAGCGCGAGUgGCU- -5'
24112 5' -60.4 NC_005263.2 + 25022 0.71 0.215343
Target:  5'- uGGCGGUGGCuGCGGUgGCGUgUACgCGGc -3'
miRNA:   3'- -CCGCCGCCG-UGCUAgCGCGaGUG-GCU- -5'
24112 5' -60.4 NC_005263.2 + 3314 0.71 0.20457
Target:  5'- cGCGGCcGCGCGGUguucaacgucugCGCGC-CGCCGGc -3'
miRNA:   3'- cCGCCGcCGUGCUA------------GCGCGaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 3311 0.71 0.217555
Target:  5'- cGCGGCGGCGCGcgguugaauuaaacuAUCGC-UUCGCgCGAu -3'
miRNA:   3'- cCGCCGCCGUGC---------------UAGCGcGAGUG-GCU- -5'
24112 5' -60.4 NC_005263.2 + 34732 0.71 0.214793
Target:  5'- uGGCGagcaauuGCGGCGCGuguuUCGCGC-CGCCc- -3'
miRNA:   3'- -CCGC-------CGCCGUGCu---AGCGCGaGUGGcu -5'
24112 5' -60.4 NC_005263.2 + 9556 0.71 0.209359
Target:  5'- cGGCGcucGCGGCuugccagGCGG-CGCGCUCGCUGc -3'
miRNA:   3'- -CCGC---CGCCG-------UGCUaGCGCGAGUGGCu -5'
24112 5' -60.4 NC_005263.2 + 17521 0.7 0.232411
Target:  5'- aGGCGGCGGCuaucacggcaaACGGUgUGCGCgaauCCGGu -3'
miRNA:   3'- -CCGCCGCCG-----------UGCUA-GCGCGagu-GGCU- -5'
24112 5' -60.4 NC_005263.2 + 35380 0.7 0.232411
Target:  5'- aGGUGGCGGCGCGG-C-UGaaCACCGAg -3'
miRNA:   3'- -CCGCCGCCGUGCUaGcGCgaGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 37989 0.7 0.232411
Target:  5'- aGGUGGCGGCaACGAacUCGCcacgauugguGCcgCACUGAa -3'
miRNA:   3'- -CCGCCGCCG-UGCU--AGCG----------CGa-GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 22360 0.7 0.238349
Target:  5'- cGCGGCGGCAagaaagcguguCGAUCG-GCggCAUCGGg -3'
miRNA:   3'- cCGCCGCCGU-----------GCUAGCgCGa-GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 47931 0.7 0.238349
Target:  5'- gGGCaGCgggcucgccccgGGCGCgGAUCGCGUgcucgCACCGAa -3'
miRNA:   3'- -CCGcCG------------CCGUG-CUAGCGCGa----GUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 24942 0.7 0.256924
Target:  5'- uGGCGGCGGacgGCGGUgCGCgGUUCGCaGAu -3'
miRNA:   3'- -CCGCCGCCg--UGCUA-GCG-CGAGUGgCU- -5'
24112 5' -60.4 NC_005263.2 + 10189 0.7 0.263375
Target:  5'- cGCGaGCaGGC-CGAa-GCGCUCGCCGGc -3'
miRNA:   3'- cCGC-CG-CCGuGCUagCGCGAGUGGCU- -5'
24112 5' -60.4 NC_005263.2 + 34045 0.7 0.265992
Target:  5'- cGGC-GCGGCGCGcUCaauGCGCUCgacgcggcgcccgugGCCGAa -3'
miRNA:   3'- -CCGcCGCCGUGCuAG---CGCGAG---------------UGGCU- -5'
24112 5' -60.4 NC_005263.2 + 13362 0.7 0.262724
Target:  5'- uGCgGGCGGCGCGAaacacgCGCcgcaauuGCUCGCCa- -3'
miRNA:   3'- cCG-CCGCCGUGCUa-----GCG-------CGAGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.