Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24113 | 3' | -51.7 | NC_005263.2 | + | 998 | 0.65 | 0.856603 |
|
Target: 5'- aUCGUCGAaugaaaugaucaAGgcccgcaaugcggGCCuUGAUCUGGAUCAGg -3' miRNA: 3'- -AGCAGCU------------UCa------------CGG-ACUAGGUCUAGUU- -5' |
|||||||
| 24113 | 3' | -51.7 | NC_005263.2 | + | 650 | 0.67 | 0.793895 |
|
Target: 5'- aCG-CGAcGUGCCgg--CCAGAUCGAa -3' miRNA: 3'- aGCaGCUuCACGGacuaGGUCUAGUU- -5' |
|||||||
| 24113 | 3' | -51.7 | NC_005263.2 | + | 10616 | 0.71 | 0.53622 |
|
Target: 5'- gUGUCGggGUGCCcGAguucggUCGGAUCGc -3' miRNA: 3'- aGCAGCuuCACGGaCUa-----GGUCUAGUu -5' |
|||||||
| 24113 | 3' | -51.7 | NC_005263.2 | + | 20999 | 0.72 | 0.478371 |
|
Target: 5'- gCGUCGAcGUGCCgGcguuucaggcgaucAUCCAGGUCGAg -3' miRNA: 3'- aGCAGCUuCACGGaC--------------UAGGUCUAGUU- -5' |
|||||||
| 24113 | 3' | -51.7 | NC_005263.2 | + | 10015 | 0.73 | 0.429758 |
|
Target: 5'- cUUGcCGAAGUGCUUcGcAUCCAGGUCAGg -3' miRNA: 3'- -AGCaGCUUCACGGA-C-UAGGUCUAGUU- -5' |
|||||||
| 24113 | 3' | -51.7 | NC_005263.2 | + | 47068 | 1.07 | 0.002262 |
|
Target: 5'- uUCGUCGAAGUGCCUGAUCCAGAUCAAg -3' miRNA: 3'- -AGCAGCUUCACGGACUAGGUCUAGUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home