miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24113 5' -49 NC_005263.2 + 17625 0.66 0.950787
Target:  5'- cGCGGGUCgcgcAUCGaugcgUUCcgUCGGCg -3'
miRNA:   3'- aCGCCCGGaac-UAGUa----AAGuaAGCUG- -5'
24113 5' -49 NC_005263.2 + 16206 0.66 0.945912
Target:  5'- aGCGaGGCUUUGAUCGguugcaggUCAgccauacCGGCg -3'
miRNA:   3'- aCGC-CCGGAACUAGUaa------AGUaa-----GCUG- -5'
24113 5' -49 NC_005263.2 + 788 0.67 0.910133
Target:  5'- cUGCGGGUCgacGUCGgcacccagUCcgUCGACa -3'
miRNA:   3'- -ACGCCCGGaacUAGUaa------AGuaAGCUG- -5'
24113 5' -49 NC_005263.2 + 25828 0.68 0.880095
Target:  5'- uUGCGGGCCguuuGUCGUUUCug-CG-Ca -3'
miRNA:   3'- -ACGCCCGGaac-UAGUAAAGuaaGCuG- -5'
24113 5' -49 NC_005263.2 + 4675 0.7 0.795482
Target:  5'- cGCGGGUCUUucgucagGAUCGUg-CcgUCGGCg -3'
miRNA:   3'- aCGCCCGGAA-------CUAGUAaaGuaAGCUG- -5'
24113 5' -49 NC_005263.2 + 24390 0.7 0.786095
Target:  5'- uUGCGGGCUggUUGGUCugugcggUCAUgUCGAUc -3'
miRNA:   3'- -ACGCCCGG--AACUAGuaa----AGUA-AGCUG- -5'
24113 5' -49 NC_005263.2 + 26345 0.7 0.764723
Target:  5'- uUGCGGGaCgUUGGUCGUggUCAUgcgcgCGAUc -3'
miRNA:   3'- -ACGCCC-GgAACUAGUAa-AGUAa----GCUG- -5'
24113 5' -49 NC_005263.2 + 22203 0.72 0.685781
Target:  5'- gGCGuGGCCcgGggCAUUUCGUcgCGACg -3'
miRNA:   3'- aCGC-CCGGaaCuaGUAAAGUAa-GCUG- -5'
24113 5' -49 NC_005263.2 + 1027 0.86 0.113504
Target:  5'- aUGCGGGCCUUGAUCuggaUCAggcacUUCGACg -3'
miRNA:   3'- -ACGCCCGGAACUAGuaa-AGU-----AAGCUG- -5'
24113 5' -49 NC_005263.2 + 47103 1.12 0.002241
Target:  5'- uUGCGGGCCUUGAUCAUUUCAUUCGACg -3'
miRNA:   3'- -ACGCCCGGAACUAGUAAAGUAAGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.