miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24114 3' -52.4 NC_005263.2 + 1075 0.66 0.796482
Target:  5'- aGGCUUGACGGaaGUGCcgaauUGCGCGACaGAa -3'
miRNA:   3'- -UUGAGCUGCUa-CAUG-----ACGUGCUGcCU- -5'
24114 3' -52.4 NC_005263.2 + 962 0.66 0.796482
Target:  5'- cGACguagCGGCGGUcgcCUGCGCGuCGGAc -3'
miRNA:   3'- -UUGa---GCUGCUAcauGACGUGCuGCCU- -5'
24114 3' -52.4 NC_005263.2 + 20318 0.66 0.796482
Target:  5'- ---aCGGCGAUGUACcGCGCGAagcaUGGc -3'
miRNA:   3'- uugaGCUGCUACAUGaCGUGCU----GCCu -5'
24114 3' -52.4 NC_005263.2 + 4080 0.66 0.796482
Target:  5'- gAAgUCGaACGGUgcGUugUGCGCGACGa- -3'
miRNA:   3'- -UUgAGC-UGCUA--CAugACGUGCUGCcu -5'
24114 3' -52.4 NC_005263.2 + 22103 0.67 0.78639
Target:  5'- cAUUCGGCGAaGUGCcGCGCGAgUGGc -3'
miRNA:   3'- uUGAGCUGCUaCAUGaCGUGCU-GCCu -5'
24114 3' -52.4 NC_005263.2 + 42255 0.67 0.776127
Target:  5'- cGGCUCGACuucg-ACcGCACGACGGc -3'
miRNA:   3'- -UUGAGCUGcuacaUGaCGUGCUGCCu -5'
24114 3' -52.4 NC_005263.2 + 41729 0.67 0.750873
Target:  5'- uACUCGACGcgGgcggcaacuucggGCgGCACGGCGcGAu -3'
miRNA:   3'- uUGAGCUGCuaCa------------UGaCGUGCUGC-CU- -5'
24114 3' -52.4 NC_005263.2 + 1640 0.67 0.744437
Target:  5'- --gUCGGCGgcGUagcccuggaugcGCUGCGCGGuCGGAa -3'
miRNA:   3'- uugAGCUGCuaCA------------UGACGUGCU-GCCU- -5'
24114 3' -52.4 NC_005263.2 + 15515 0.67 0.744437
Target:  5'- cGCUCGGCGAUGUGCU-CAUcGCGc- -3'
miRNA:   3'- uUGAGCUGCUACAUGAcGUGcUGCcu -5'
24114 3' -52.4 NC_005263.2 + 30802 0.68 0.689367
Target:  5'- uGCUCGGCGgcG-ACgUGCuCGGCGGAc -3'
miRNA:   3'- uUGAGCUGCuaCaUG-ACGuGCUGCCU- -5'
24114 3' -52.4 NC_005263.2 + 38086 0.69 0.655522
Target:  5'- cAGCUCGGCGGcgGUGCUGCGCccgcaccuGGCGc- -3'
miRNA:   3'- -UUGAGCUGCUa-CAUGACGUG--------CUGCcu -5'
24114 3' -52.4 NC_005263.2 + 19684 0.69 0.655522
Target:  5'- aAGCUCaGCGAUGUGCugaaagcgaucUGCACGcCGGc -3'
miRNA:   3'- -UUGAGcUGCUACAUG-----------ACGUGCuGCCu -5'
24114 3' -52.4 NC_005263.2 + 42115 0.69 0.632823
Target:  5'- ---aCGACGAggauagcgucGUGCUGCGCGACGaGGc -3'
miRNA:   3'- uugaGCUGCUa---------CAUGACGUGCUGC-CU- -5'
24114 3' -52.4 NC_005263.2 + 14089 0.7 0.5875
Target:  5'- cAugUCGGCuGGUaccgGCUGCGCGGCGGu -3'
miRNA:   3'- -UugAGCUG-CUAca--UGACGUGCUGCCu -5'
24114 3' -52.4 NC_005263.2 + 46202 0.7 0.565039
Target:  5'- cGCUCGuCGAauacGUACUGCGCGACu-- -3'
miRNA:   3'- uUGAGCuGCUa---CAUGACGUGCUGccu -5'
24114 3' -52.4 NC_005263.2 + 29278 0.71 0.531799
Target:  5'- gAACgCGGCaAUGaGCUGCACGGCGGc -3'
miRNA:   3'- -UUGaGCUGcUACaUGACGUGCUGCCu -5'
24114 3' -52.4 NC_005263.2 + 20526 0.71 0.510034
Target:  5'- gGAUUCGuCGAUGUGCUGC-CGcugcucgaagaaACGGAc -3'
miRNA:   3'- -UUGAGCuGCUACAUGACGuGC------------UGCCU- -5'
24114 3' -52.4 NC_005263.2 + 44850 0.72 0.478118
Target:  5'- uACUCGACGccUGU-CUGCGCGGCGa- -3'
miRNA:   3'- uUGAGCUGCu-ACAuGACGUGCUGCcu -5'
24114 3' -52.4 NC_005263.2 + 8736 0.73 0.411651
Target:  5'- uACUCGGCGAgcgggGUcgagacguuuuuaacGCUGCGCGGCaGGAu -3'
miRNA:   3'- uUGAGCUGCUa----CA---------------UGACGUGCUG-CCU- -5'
24114 3' -52.4 NC_005263.2 + 16421 0.73 0.407808
Target:  5'- uACUCGGCGucgGcGCUgGCGCGGCGGGc -3'
miRNA:   3'- uUGAGCUGCua-CaUGA-CGUGCUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.