miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24115 3' -56.2 NC_005263.2 + 29358 0.66 0.584198
Target:  5'- -cGC-CGCCUACGA-UCGC-GCCGa- -3'
miRNA:   3'- uaCGaGCGGAUGUUgAGCGaCGGCau -5'
24115 3' -56.2 NC_005263.2 + 45238 0.66 0.572989
Target:  5'- -aGCgagaUCGUCUACAACUgGCgggcggGCCGg- -3'
miRNA:   3'- uaCG----AGCGGAUGUUGAgCGa-----CGGCau -5'
24115 3' -56.2 NC_005263.2 + 29420 0.66 0.561831
Target:  5'- cUGCcgCGCCgcUAGCUUGCUGCgCGa- -3'
miRNA:   3'- uACGa-GCGGauGUUGAGCGACG-GCau -5'
24115 3' -56.2 NC_005263.2 + 13150 0.66 0.550732
Target:  5'- -gGCaUCGCCUAUA--UgGCUGCCGg- -3'
miRNA:   3'- uaCG-AGCGGAUGUugAgCGACGGCau -5'
24115 3' -56.2 NC_005263.2 + 16604 0.67 0.507095
Target:  5'- -gGCUCGCgCgcgagcaGCAGCUCGC-GCCGc- -3'
miRNA:   3'- uaCGAGCG-Ga------UGUUGAGCGaCGGCau -5'
24115 3' -56.2 NC_005263.2 + 36370 0.67 0.496411
Target:  5'- -cGCgUCGCCUACGG-UUGCaagauUGCCGUAa -3'
miRNA:   3'- uaCG-AGCGGAUGUUgAGCG-----ACGGCAU- -5'
24115 3' -56.2 NC_005263.2 + 26303 0.67 0.485829
Target:  5'- uUGCUCGCCggcCAGCU-GCagGCCGg- -3'
miRNA:   3'- uACGAGCGGau-GUUGAgCGa-CGGCau -5'
24115 3' -56.2 NC_005263.2 + 32795 0.67 0.464996
Target:  5'- -gGCccgCGCCUcgcGCAGCUCGCUGaCGa- -3'
miRNA:   3'- uaCGa--GCGGA---UGUUGAGCGACgGCau -5'
24115 3' -56.2 NC_005263.2 + 12560 0.67 0.464996
Target:  5'- aAUGCUgCGUUUGCGAacgUGCUGCCGa- -3'
miRNA:   3'- -UACGA-GCGGAUGUUga-GCGACGGCau -5'
24115 3' -56.2 NC_005263.2 + 13413 0.68 0.444638
Target:  5'- -cGCgUCGCaUGCAcUUCGCUGCCGa- -3'
miRNA:   3'- uaCG-AGCGgAUGUuGAGCGACGGCau -5'
24115 3' -56.2 NC_005263.2 + 2280 0.69 0.38673
Target:  5'- -cGUUCGCCgucgGCAGgUCGUgcGCCGUGg -3'
miRNA:   3'- uaCGAGCGGa---UGUUgAGCGa-CGGCAU- -5'
24115 3' -56.2 NC_005263.2 + 44314 0.69 0.377573
Target:  5'- -cGCUCGCCUcGCAGaUCGCaaagGCCGa- -3'
miRNA:   3'- uaCGAGCGGA-UGUUgAGCGa---CGGCau -5'
24115 3' -56.2 NC_005263.2 + 9566 0.7 0.309704
Target:  5'- -gGCUUGCCagGCGgcgcGCUCGCUGCCc-- -3'
miRNA:   3'- uaCGAGCGGa-UGU----UGAGCGACGGcau -5'
24115 3' -56.2 NC_005263.2 + 32721 0.71 0.272224
Target:  5'- cGUGCggaUCGCCaaUGCAACguacgCGCUGCCGc- -3'
miRNA:   3'- -UACG---AGCGG--AUGUUGa----GCGACGGCau -5'
24115 3' -56.2 NC_005263.2 + 11318 0.71 0.272224
Target:  5'- -gGcCUCGCCagGCAACaCGCUGCCGa- -3'
miRNA:   3'- uaC-GAGCGGa-UGUUGaGCGACGGCau -5'
24115 3' -56.2 NC_005263.2 + 18793 0.72 0.238475
Target:  5'- cGUGCUCGCCgcgcGCGAUgCGCaUGCCGa- -3'
miRNA:   3'- -UACGAGCGGa---UGUUGaGCG-ACGGCau -5'
24115 3' -56.2 NC_005263.2 + 15004 0.72 0.23216
Target:  5'- cUGCUCGCCgGCua-UCGCcGCCGUGu -3'
miRNA:   3'- uACGAGCGGaUGuugAGCGaCGGCAU- -5'
24115 3' -56.2 NC_005263.2 + 26934 0.73 0.214057
Target:  5'- -aGCUCGCCacgcaguugAUGACgUCGCUGCCGUc -3'
miRNA:   3'- uaCGAGCGGa--------UGUUG-AGCGACGGCAu -5'
24115 3' -56.2 NC_005263.2 + 34772 0.73 0.204906
Target:  5'- -cGUUCGCCggcaucagcaugacGCAGCUCGCgaUGCCGUAc -3'
miRNA:   3'- uaCGAGCGGa-------------UGUUGAGCG--ACGGCAU- -5'
24115 3' -56.2 NC_005263.2 + 46014 1.04 0.001036
Target:  5'- gAUGCUCGCCUACAACUCGCUGCCGUAc -3'
miRNA:   3'- -UACGAGCGGAUGUUGAGCGACGGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.