miRNA display CGI


Results 61 - 80 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24116 3' -59.1 NC_005263.2 + 13362 0.67 0.441387
Target:  5'- uGCgGGC-GGCGCGA--AACaCGCGCc -3'
miRNA:   3'- gCGgCCGuUCGCGCUacUUG-GCGCGc -5'
24116 3' -59.1 NC_005263.2 + 694 0.67 0.441387
Target:  5'- uGCCGaGCGcGC-CGAUGAACuCGaCGCa -3'
miRNA:   3'- gCGGC-CGUuCGcGCUACUUG-GC-GCGc -5'
24116 3' -59.1 NC_005263.2 + 17639 0.67 0.441387
Target:  5'- gCGCCGGauguGGCgcaacGCGAaGGccGCCGCGCu -3'
miRNA:   3'- -GCGGCCgu--UCG-----CGCUaCU--UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 39334 0.67 0.441387
Target:  5'- gCGCgGGCcGGCGUcAUccuGCCGCGCa -3'
miRNA:   3'- -GCGgCCGuUCGCGcUAcu-UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 46977 0.67 0.431903
Target:  5'- aCGCCGuGCGcagcacGGCGCGGacu-UCGCGCGc -3'
miRNA:   3'- -GCGGC-CGU------UCGCGCUacuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1418 0.67 0.431903
Target:  5'- uCGUCGGCGcGCGCcgccuuGGCUGCGCGc -3'
miRNA:   3'- -GCGGCCGUuCGCGcuac--UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 19758 0.68 0.36057
Target:  5'- gCGCUGGC-GGCGCucGUG-GCCGUGUGg -3'
miRNA:   3'- -GCGGCCGuUCGCGc-UACuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 31393 0.68 0.36057
Target:  5'- uCGCgCGGUAGGUGCGcUGcAGCUGCuGCa -3'
miRNA:   3'- -GCG-GCCGUUCGCGCuAC-UUGGCG-CGc -5'
24116 3' -59.1 NC_005263.2 + 20206 0.68 0.377618
Target:  5'- cCGCCGuCGAGUGCuuUGcccGACUGCGCGc -3'
miRNA:   3'- -GCGGCcGUUCGCGcuAC---UUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 1282 0.68 0.35225
Target:  5'- aGUCGGagcGGCGCGAaaGAUCGCGCu -3'
miRNA:   3'- gCGGCCgu-UCGCGCUacUUGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 10879 0.68 0.36057
Target:  5'- -cUCGGCAccGGCGCGcgucGUGAGCgGCGUa -3'
miRNA:   3'- gcGGCCGU--UCGCGC----UACUUGgCGCGc -5'
24116 3' -59.1 NC_005263.2 + 20304 0.68 0.369026
Target:  5'- aCGCC-GCGAucacGacgGCGAUGuACCGCGCGa -3'
miRNA:   3'- -GCGGcCGUU----Cg--CGCUACuUGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 23876 0.68 0.377618
Target:  5'- cCGCCgcaaGGCGaagauuucaacGGCGCGcUGAACCaggucGCGCGc -3'
miRNA:   3'- -GCGG----CCGU-----------UCGCGCuACUUGG-----CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 8258 0.68 0.377618
Target:  5'- aGCCGGguAuGCGCGuucgGAcgGCCacaGCGCGa -3'
miRNA:   3'- gCGGCCguU-CGCGCua--CU--UGG---CGCGC- -5'
24116 3' -59.1 NC_005263.2 + 750 0.68 0.383711
Target:  5'- gCGCCGcccauuucggcgacGCGcAGCGCGAUGuacGACUGCGgGu -3'
miRNA:   3'- -GCGGC--------------CGU-UCGCGCUAC---UUGGCGCgC- -5'
24116 3' -59.1 NC_005263.2 + 35612 0.68 0.392528
Target:  5'- aGCCGGCGcgcaggaugccgcaAuGCGCGccgccgguaucGUGuuCCGCGCGg -3'
miRNA:   3'- gCGGCCGU--------------U-CGCGC-----------UACuuGGCGCGC- -5'
24116 3' -59.1 NC_005263.2 + 45293 0.68 0.395199
Target:  5'- uCGCCGGauuuuguGGuCGCGuAUGAcgcGCUGCGCa -3'
miRNA:   3'- -GCGGCCgu-----UC-GCGC-UACU---UGGCGCGc -5'
24116 3' -59.1 NC_005263.2 + 31341 0.68 0.384586
Target:  5'- aCGCCGGCGgccgucaGGCGCGAcuccauaaagcccUGcuGCUGCGgGc -3'
miRNA:   3'- -GCGGCCGU-------UCGCGCU-------------ACu-UGGCGCgC- -5'
24116 3' -59.1 NC_005263.2 + 14102 0.68 0.386342
Target:  5'- -aCCGGCu-GCGCGgcGGucGCCGuCGCGa -3'
miRNA:   3'- gcGGCCGuuCGCGCuaCU--UGGC-GCGC- -5'
24116 3' -59.1 NC_005263.2 + 47212 0.68 0.386342
Target:  5'- cCGCCGGCG---GCGAcc-GCCGCGCu -3'
miRNA:   3'- -GCGGCCGUucgCGCUacuUGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.